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This commit is contained in:
		
							
								
								
									
										107
									
								
								cs440-acg/ext/eigen/bench/btl/CMakeLists.txt
									
									
									
									
									
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										107
									
								
								cs440-acg/ext/eigen/bench/btl/CMakeLists.txt
									
									
									
									
									
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							@@ -0,0 +1,107 @@
 | 
			
		||||
PROJECT(BTL)
 | 
			
		||||
 | 
			
		||||
CMAKE_MINIMUM_REQUIRED(VERSION 2.6.2)
 | 
			
		||||
 | 
			
		||||
set(CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake ${Eigen_SOURCE_DIR}/cmake)
 | 
			
		||||
include(MacroOptionalAddSubdirectory)
 | 
			
		||||
 | 
			
		||||
OPTION(BTL_NOVEC "Disable SSE/Altivec optimizations when possible" OFF)
 | 
			
		||||
 | 
			
		||||
SET(CMAKE_INCLUDE_CURRENT_DIR ON)
 | 
			
		||||
 | 
			
		||||
string(REGEX MATCH icpc IS_ICPC ${CMAKE_CXX_COMPILER})
 | 
			
		||||
IF(CMAKE_COMPILER_IS_GNUCXX OR IS_ICPC)
 | 
			
		||||
  SET(CMAKE_CXX_FLAGS "-g0 -O3 -DNDEBUG ${CMAKE_CXX_FLAGS}")
 | 
			
		||||
  SET(CMAKE_Fortran_FLAGS "-g0 -O3 -DNDEBUG ${CMAKE_Fortran_FLAGS}")
 | 
			
		||||
  IF(BTL_NOVEC)
 | 
			
		||||
    SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DEIGEN_DONT_VECTORIZE")
 | 
			
		||||
  ENDIF(BTL_NOVEC)
 | 
			
		||||
ENDIF(CMAKE_COMPILER_IS_GNUCXX OR IS_ICPC)
 | 
			
		||||
 | 
			
		||||
IF(MSVC)
 | 
			
		||||
  SET(CMAKE_CXX_FLAGS " /O2 /Ot /GL /fp:fast -DNDEBUG")
 | 
			
		||||
#   SET(CMAKE_Fortran_FLAGS "-g0 -O3 -DNDEBUG")
 | 
			
		||||
  IF(BTL_NOVEC)
 | 
			
		||||
    SET(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DEIGEN_DONT_VECTORIZE")
 | 
			
		||||
  ENDIF(BTL_NOVEC)
 | 
			
		||||
ENDIF(MSVC)
 | 
			
		||||
 | 
			
		||||
if(IS_ICPC)
 | 
			
		||||
  set(CMAKE_CXX_FLAGS "-fast ${CMAKE_CXX_FLAGS}")
 | 
			
		||||
  set(CMAKE_Fortran_FLAGS "-fast ${CMAKE_Fortran_FLAGS}")
 | 
			
		||||
endif(IS_ICPC)
 | 
			
		||||
 | 
			
		||||
include_directories(
 | 
			
		||||
  ${PROJECT_SOURCE_DIR}/actions
 | 
			
		||||
  ${PROJECT_SOURCE_DIR}/generic_bench
 | 
			
		||||
  ${PROJECT_SOURCE_DIR}/generic_bench/utils
 | 
			
		||||
  ${PROJECT_SOURCE_DIR}/libs/STL)
 | 
			
		||||
 | 
			
		||||
# find_package(MKL)
 | 
			
		||||
# if (MKL_FOUND)
 | 
			
		||||
#   add_definitions(-DHAVE_MKL)
 | 
			
		||||
#   set(DEFAULT_LIBRARIES ${MKL_LIBRARIES})
 | 
			
		||||
# endif (MKL_FOUND)
 | 
			
		||||
 | 
			
		||||
find_library(EIGEN_BTL_RT_LIBRARY rt)
 | 
			
		||||
# if we cannot find it easily, then we don't need it!
 | 
			
		||||
if(NOT EIGEN_BTL_RT_LIBRARY)
 | 
			
		||||
  set(EIGEN_BTL_RT_LIBRARY "")
 | 
			
		||||
endif()
 | 
			
		||||
 | 
			
		||||
MACRO(BTL_ADD_BENCH targetname)
 | 
			
		||||
 | 
			
		||||
  foreach(_current_var ${ARGN})
 | 
			
		||||
    set(_last_var ${_current_var})
 | 
			
		||||
  endforeach(_current_var)
 | 
			
		||||
 | 
			
		||||
  set(_sources ${ARGN})
 | 
			
		||||
  list(LENGTH _sources _argn_length)
 | 
			
		||||
 | 
			
		||||
  list(REMOVE_ITEM _sources ON OFF TRUE FALSE)
 | 
			
		||||
 | 
			
		||||
  list(LENGTH _sources _src_length)
 | 
			
		||||
 | 
			
		||||
  if (${_argn_length} EQUAL ${_src_length})
 | 
			
		||||
    set(_last_var ON)
 | 
			
		||||
  endif (${_argn_length} EQUAL ${_src_length})
 | 
			
		||||
 | 
			
		||||
  OPTION(BUILD_${targetname} "Build benchmark ${targetname}" ${_last_var})
 | 
			
		||||
 | 
			
		||||
  IF(BUILD_${targetname})
 | 
			
		||||
    ADD_EXECUTABLE(${targetname} ${_sources})
 | 
			
		||||
    ADD_TEST(${targetname} "${targetname}")
 | 
			
		||||
    target_link_libraries(${targetname} ${DEFAULT_LIBRARIES} ${EIGEN_BTL_RT_LIBRARY})
 | 
			
		||||
  ENDIF(BUILD_${targetname})
 | 
			
		||||
 | 
			
		||||
ENDMACRO(BTL_ADD_BENCH)
 | 
			
		||||
 | 
			
		||||
macro(btl_add_target_property target prop value)
 | 
			
		||||
 | 
			
		||||
  if(BUILD_${target})
 | 
			
		||||
    get_target_property(previous ${target} ${prop})
 | 
			
		||||
    if(NOT previous)
 | 
			
		||||
      set(previous "")
 | 
			
		||||
    endif()
 | 
			
		||||
    set_target_properties(${target} PROPERTIES ${prop} "${previous} ${value}")
 | 
			
		||||
  endif()
 | 
			
		||||
 | 
			
		||||
endmacro(btl_add_target_property)
 | 
			
		||||
 | 
			
		||||
ENABLE_TESTING()
 | 
			
		||||
 | 
			
		||||
add_subdirectory(libs/eigen3)
 | 
			
		||||
add_subdirectory(libs/eigen2)
 | 
			
		||||
add_subdirectory(libs/tensors)
 | 
			
		||||
add_subdirectory(libs/BLAS)
 | 
			
		||||
add_subdirectory(libs/ublas)
 | 
			
		||||
add_subdirectory(libs/gmm)
 | 
			
		||||
add_subdirectory(libs/mtl4)
 | 
			
		||||
add_subdirectory(libs/blitz)
 | 
			
		||||
add_subdirectory(libs/tvmet)
 | 
			
		||||
add_subdirectory(libs/STL)
 | 
			
		||||
add_subdirectory(libs/blaze)
 | 
			
		||||
 | 
			
		||||
add_subdirectory(data)
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										340
									
								
								cs440-acg/ext/eigen/bench/btl/COPYING
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										340
									
								
								cs440-acg/ext/eigen/bench/btl/COPYING
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,340 @@
 | 
			
		||||
                    GNU GENERAL PUBLIC LICENSE
 | 
			
		||||
                       Version 2, June 1991
 | 
			
		||||
 | 
			
		||||
 Copyright (C) 1989, 1991 Free Software Foundation, Inc.
 | 
			
		||||
                       59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 | 
			
		||||
 Everyone is permitted to copy and distribute verbatim copies
 | 
			
		||||
 of this license document, but changing it is not allowed.
 | 
			
		||||
 | 
			
		||||
                            Preamble
 | 
			
		||||
 | 
			
		||||
  The licenses for most software are designed to take away your
 | 
			
		||||
freedom to share and change it.  By contrast, the GNU General Public
 | 
			
		||||
License is intended to guarantee your freedom to share and change free
 | 
			
		||||
software--to make sure the software is free for all its users.  This
 | 
			
		||||
General Public License applies to most of the Free Software
 | 
			
		||||
Foundation's software and to any other program whose authors commit to
 | 
			
		||||
using it.  (Some other Free Software Foundation software is covered by
 | 
			
		||||
the GNU Library General Public License instead.)  You can apply it to
 | 
			
		||||
your programs, too.
 | 
			
		||||
 | 
			
		||||
  When we speak of free software, we are referring to freedom, not
 | 
			
		||||
price.  Our General Public Licenses are designed to make sure that you
 | 
			
		||||
have the freedom to distribute copies of free software (and charge for
 | 
			
		||||
this service if you wish), that you receive source code or can get it
 | 
			
		||||
if you want it, that you can change the software or use pieces of it
 | 
			
		||||
in new free programs; and that you know you can do these things.
 | 
			
		||||
 | 
			
		||||
  To protect your rights, we need to make restrictions that forbid
 | 
			
		||||
anyone to deny you these rights or to ask you to surrender the rights.
 | 
			
		||||
These restrictions translate to certain responsibilities for you if you
 | 
			
		||||
distribute copies of the software, or if you modify it.
 | 
			
		||||
 | 
			
		||||
  For example, if you distribute copies of such a program, whether
 | 
			
		||||
gratis or for a fee, you must give the recipients all the rights that
 | 
			
		||||
you have.  You must make sure that they, too, receive or can get the
 | 
			
		||||
source code.  And you must show them these terms so they know their
 | 
			
		||||
rights.
 | 
			
		||||
 | 
			
		||||
  We protect your rights with two steps: (1) copyright the software, and
 | 
			
		||||
(2) offer you this license which gives you legal permission to copy,
 | 
			
		||||
distribute and/or modify the software.
 | 
			
		||||
 | 
			
		||||
  Also, for each author's protection and ours, we want to make certain
 | 
			
		||||
that everyone understands that there is no warranty for this free
 | 
			
		||||
software.  If the software is modified by someone else and passed on, we
 | 
			
		||||
want its recipients to know that what they have is not the original, so
 | 
			
		||||
that any problems introduced by others will not reflect on the original
 | 
			
		||||
authors' reputations.
 | 
			
		||||
 | 
			
		||||
  Finally, any free program is threatened constantly by software
 | 
			
		||||
patents.  We wish to avoid the danger that redistributors of a free
 | 
			
		||||
program will individually obtain patent licenses, in effect making the
 | 
			
		||||
program proprietary.  To prevent this, we have made it clear that any
 | 
			
		||||
patent must be licensed for everyone's free use or not licensed at all.
 | 
			
		||||
 | 
			
		||||
  The precise terms and conditions for copying, distribution and
 | 
			
		||||
modification follow.
 | 
			
		||||
 | 
			
		||||
                    GNU GENERAL PUBLIC LICENSE
 | 
			
		||||
   TERMS AND CONDITIONS FOR COPYING, DISTRIBUTION AND MODIFICATION
 | 
			
		||||
 | 
			
		||||
  0. This License applies to any program or other work which contains
 | 
			
		||||
a notice placed by the copyright holder saying it may be distributed
 | 
			
		||||
under the terms of this General Public License.  The "Program", below,
 | 
			
		||||
refers to any such program or work, and a "work based on the Program"
 | 
			
		||||
means either the Program or any derivative work under copyright law:
 | 
			
		||||
that is to say, a work containing the Program or a portion of it,
 | 
			
		||||
either verbatim or with modifications and/or translated into another
 | 
			
		||||
language.  (Hereinafter, translation is included without limitation in
 | 
			
		||||
the term "modification".)  Each licensee is addressed as "you".
 | 
			
		||||
 | 
			
		||||
Activities other than copying, distribution and modification are not
 | 
			
		||||
covered by this License; they are outside its scope.  The act of
 | 
			
		||||
running the Program is not restricted, and the output from the Program
 | 
			
		||||
is covered only if its contents constitute a work based on the
 | 
			
		||||
Program (independent of having been made by running the Program).
 | 
			
		||||
Whether that is true depends on what the Program does.
 | 
			
		||||
 | 
			
		||||
  1. You may copy and distribute verbatim copies of the Program's
 | 
			
		||||
source code as you receive it, in any medium, provided that you
 | 
			
		||||
conspicuously and appropriately publish on each copy an appropriate
 | 
			
		||||
copyright notice and disclaimer of warranty; keep intact all the
 | 
			
		||||
notices that refer to this License and to the absence of any warranty;
 | 
			
		||||
and give any other recipients of the Program a copy of this License
 | 
			
		||||
along with the Program.
 | 
			
		||||
 | 
			
		||||
You may charge a fee for the physical act of transferring a copy, and
 | 
			
		||||
you may at your option offer warranty protection in exchange for a fee.
 | 
			
		||||
 | 
			
		||||
  2. You may modify your copy or copies of the Program or any portion
 | 
			
		||||
of it, thus forming a work based on the Program, and copy and
 | 
			
		||||
distribute such modifications or work under the terms of Section 1
 | 
			
		||||
above, provided that you also meet all of these conditions:
 | 
			
		||||
 | 
			
		||||
    a) You must cause the modified files to carry prominent notices
 | 
			
		||||
    stating that you changed the files and the date of any change.
 | 
			
		||||
 | 
			
		||||
    b) You must cause any work that you distribute or publish, that in
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    whole or in part contains or is derived from the Program or any
 | 
			
		||||
    part thereof, to be licensed as a whole at no charge to all third
 | 
			
		||||
    parties under the terms of this License.
 | 
			
		||||
 | 
			
		||||
    c) If the modified program normally reads commands interactively
 | 
			
		||||
    when run, you must cause it, when started running for such
 | 
			
		||||
    interactive use in the most ordinary way, to print or display an
 | 
			
		||||
    announcement including an appropriate copyright notice and a
 | 
			
		||||
    notice that there is no warranty (or else, saying that you provide
 | 
			
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    a warranty) and that users may redistribute the program under
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    these conditions, and telling the user how to view a copy of this
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		||||
    License.  (Exception: if the Program itself is interactive but
 | 
			
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    does not normally print such an announcement, your work based on
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    the Program is not required to print an announcement.)
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		||||
 | 
			
		||||
These requirements apply to the modified work as a whole.  If
 | 
			
		||||
identifiable sections of that work are not derived from the Program,
 | 
			
		||||
and can be reasonably considered independent and separate works in
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		||||
themselves, then this License, and its terms, do not apply to those
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		||||
sections when you distribute them as separate works.  But when you
 | 
			
		||||
distribute the same sections as part of a whole which is a work based
 | 
			
		||||
on the Program, the distribution of the whole must be on the terms of
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		||||
this License, whose permissions for other licensees extend to the
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		||||
entire whole, and thus to each and every part regardless of who wrote it.
 | 
			
		||||
 | 
			
		||||
Thus, it is not the intent of this section to claim rights or contest
 | 
			
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your rights to work written entirely by you; rather, the intent is to
 | 
			
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exercise the right to control the distribution of derivative or
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collective works based on the Program.
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In addition, mere aggregation of another work not based on the Program
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with the Program (or with a work based on the Program) on a volume of
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		||||
a storage or distribution medium does not bring the other work under
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		||||
the scope of this License.
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		||||
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		||||
  3. You may copy and distribute the Program (or a work based on it,
 | 
			
		||||
under Section 2) in object code or executable form under the terms of
 | 
			
		||||
Sections 1 and 2 above provided that you also do one of the following:
 | 
			
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 | 
			
		||||
    a) Accompany it with the complete corresponding machine-readable
 | 
			
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    source code, which must be distributed under the terms of Sections
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    1 and 2 above on a medium customarily used for software interchange; or,
 | 
			
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 | 
			
		||||
    b) Accompany it with a written offer, valid for at least three
 | 
			
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    years, to give any third party, for a charge no more than your
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    cost of physically performing source distribution, a complete
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		||||
    machine-readable copy of the corresponding source code, to be
 | 
			
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    distributed under the terms of Sections 1 and 2 above on a medium
 | 
			
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    customarily used for software interchange; or,
 | 
			
		||||
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		||||
    c) Accompany it with the information you received as to the offer
 | 
			
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    to distribute corresponding source code.  (This alternative is
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		||||
    allowed only for noncommercial distribution and only if you
 | 
			
		||||
    received the program in object code or executable form with such
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		||||
    an offer, in accord with Subsection b above.)
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		||||
The source code for a work means the preferred form of the work for
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code means all the source code for all modules it contains, plus any
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associated interface definition files, plus the scripts used to
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special exception, the source code distributed need not include
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anything that is normally distributed (in either source or binary
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form) with the major components (compiler, kernel, and so on) of the
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operating system on which the executable runs, unless that component
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itself accompanies the executable.
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If distribution of executable or object code is made by offering
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access to copy the source code from the same place counts as
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distribution of the source code, even though third parties are not
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		||||
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		||||
  4. You may not copy, modify, sublicense, or distribute the Program
 | 
			
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void, and will automatically terminate your rights under this License.
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However, parties who have received copies, or rights, from you under
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  5. You are not required to accept this License, since you have not
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prohibited by law if you do not accept this License.  Therefore, by
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Program), you indicate your acceptance of this License to do so, and
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  6. Each time you redistribute the Program (or any work based on the
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You are not responsible for enforcing compliance by third parties to
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  7. If, as a consequence of a court judgment or allegation of patent
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infringement or for any other reason (not limited to patent issues),
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excuse you from the conditions of this License.  If you cannot
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distribute so as to satisfy simultaneously your obligations under this
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License and any other pertinent obligations, then as a consequence you
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may not distribute the Program at all.  For example, if a patent
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license would not permit royalty-free redistribution of the Program by
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the only way you could satisfy both it and this License would be to
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refrain entirely from distribution of the Program.
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If any portion of this section is held invalid or unenforceable under
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circumstances.
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It is not the purpose of this section to induce you to infringe any
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the limitation as if written in the body of this License.
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 | 
			
		||||
  9. The Free Software Foundation may publish revised and/or new versions
 | 
			
		||||
of the General Public License from time to time.  Such new versions will
 | 
			
		||||
be similar in spirit to the present version, but may differ in detail to
 | 
			
		||||
address new problems or concerns.
 | 
			
		||||
 | 
			
		||||
Each version is given a distinguishing version number.  If the Program
 | 
			
		||||
specifies a version number of this License which applies to it and "any
 | 
			
		||||
later version", you have the option of following the terms and conditions
 | 
			
		||||
either of that version or of any later version published by the Free
 | 
			
		||||
Software Foundation.  If the Program does not specify a version number of
 | 
			
		||||
this License, you may choose any version ever published by the Free Software
 | 
			
		||||
Foundation.
 | 
			
		||||
 | 
			
		||||
  10. If you wish to incorporate parts of the Program into other free
 | 
			
		||||
programs whose distribution conditions are different, write to the author
 | 
			
		||||
to ask for permission.  For software which is copyrighted by the Free
 | 
			
		||||
Software Foundation, write to the Free Software Foundation; we sometimes
 | 
			
		||||
make exceptions for this.  Our decision will be guided by the two goals
 | 
			
		||||
of preserving the free status of all derivatives of our free software and
 | 
			
		||||
of promoting the sharing and reuse of software generally.
 | 
			
		||||
 | 
			
		||||
                            NO WARRANTY
 | 
			
		||||
 | 
			
		||||
  11. BECAUSE THE PROGRAM IS LICENSED FREE OF CHARGE, THERE IS NO WARRANTY
 | 
			
		||||
FOR THE PROGRAM, TO THE EXTENT PERMITTED BY APPLICABLE LAW.  EXCEPT WHEN
 | 
			
		||||
OTHERWISE STATED IN WRITING THE COPYRIGHT HOLDERS AND/OR OTHER PARTIES
 | 
			
		||||
PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESSED
 | 
			
		||||
OR IMPLIED, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF
 | 
			
		||||
MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.  THE ENTIRE RISK AS
 | 
			
		||||
TO THE QUALITY AND PERFORMANCE OF THE PROGRAM IS WITH YOU.  SHOULD THE
 | 
			
		||||
PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF ALL NECESSARY SERVICING,
 | 
			
		||||
REPAIR OR CORRECTION.
 | 
			
		||||
 | 
			
		||||
  12. IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
 | 
			
		||||
WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MAY MODIFY AND/OR
 | 
			
		||||
REDISTRIBUTE THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES,
 | 
			
		||||
INCLUDING ANY GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING
 | 
			
		||||
OUT OF THE USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED
 | 
			
		||||
TO LOSS OF DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY
 | 
			
		||||
YOU OR THIRD PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER
 | 
			
		||||
PROGRAMS), EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE
 | 
			
		||||
POSSIBILITY OF SUCH DAMAGES.
 | 
			
		||||
 | 
			
		||||
                     END OF TERMS AND CONDITIONS
 | 
			
		||||
 | 
			
		||||
            How to Apply These Terms to Your New Programs
 | 
			
		||||
 | 
			
		||||
  If you develop a new program, and you want it to be of the greatest
 | 
			
		||||
possible use to the public, the best way to achieve this is to make it
 | 
			
		||||
free software which everyone can redistribute and change under these terms.
 | 
			
		||||
 | 
			
		||||
  To do so, attach the following notices to the program.  It is safest
 | 
			
		||||
to attach them to the start of each source file to most effectively
 | 
			
		||||
convey the exclusion of warranty; and each file should have at least
 | 
			
		||||
the "copyright" line and a pointer to where the full notice is found.
 | 
			
		||||
 | 
			
		||||
    <one line to give the program's name and a brief idea of what it does.>
 | 
			
		||||
    Copyright (C) <year>  <name of author>
 | 
			
		||||
 | 
			
		||||
    This program is free software; you can redistribute it and/or modify
 | 
			
		||||
    it under the terms of the GNU General Public License as published by
 | 
			
		||||
    the Free Software Foundation; either version 2 of the License, or
 | 
			
		||||
    (at your option) any later version.
 | 
			
		||||
 | 
			
		||||
    This program is distributed in the hope that it will be useful,
 | 
			
		||||
    but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
    GNU General Public License for more details.
 | 
			
		||||
 | 
			
		||||
    You should have received a copy of the GNU General Public License
 | 
			
		||||
    along with this program; if not, write to the Free Software
 | 
			
		||||
    Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
Also add information on how to contact you by electronic and paper mail.
 | 
			
		||||
 | 
			
		||||
If the program is interactive, make it output a short notice like this
 | 
			
		||||
when it starts in an interactive mode:
 | 
			
		||||
 | 
			
		||||
    Gnomovision version 69, Copyright (C) year name of author
 | 
			
		||||
    Gnomovision comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
 | 
			
		||||
    This is free software, and you are welcome to redistribute it
 | 
			
		||||
    under certain conditions; type `show c' for details.
 | 
			
		||||
 | 
			
		||||
The hypothetical commands `show w' and `show c' should show the appropriate
 | 
			
		||||
parts of the General Public License.  Of course, the commands you use may
 | 
			
		||||
be called something other than `show w' and `show c'; they could even be
 | 
			
		||||
mouse-clicks or menu items--whatever suits your program.
 | 
			
		||||
 | 
			
		||||
You should also get your employer (if you work as a programmer) or your
 | 
			
		||||
school, if any, to sign a "copyright disclaimer" for the program, if
 | 
			
		||||
necessary.  Here is a sample; alter the names:
 | 
			
		||||
 | 
			
		||||
  Yoyodyne, Inc., hereby disclaims all copyright interest in the program
 | 
			
		||||
  `Gnomovision' (which makes passes at compilers) written by James Hacker.
 | 
			
		||||
 | 
			
		||||
  <signature of Ty Coon>, 1 April 1989
 | 
			
		||||
  Ty Coon, President of Vice
 | 
			
		||||
 | 
			
		||||
This General Public License does not permit incorporating your program into
 | 
			
		||||
proprietary programs.  If your program is a subroutine library, you may
 | 
			
		||||
consider it more useful to permit linking proprietary applications with the
 | 
			
		||||
library.  If this is what you want to do, use the GNU Library General
 | 
			
		||||
Public License instead of this License.
 | 
			
		||||
							
								
								
									
										154
									
								
								cs440-acg/ext/eigen/bench/btl/README
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										154
									
								
								cs440-acg/ext/eigen/bench/btl/README
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,154 @@
 | 
			
		||||
Bench Template Library
 | 
			
		||||
 | 
			
		||||
****************************************
 | 
			
		||||
Introduction :
 | 
			
		||||
 | 
			
		||||
The aim of this project is to compare the performance
 | 
			
		||||
of available numerical libraries. The code is designed
 | 
			
		||||
as generic and modular as possible. Thus, adding new
 | 
			
		||||
numerical libraries or new numerical tests should
 | 
			
		||||
require minimal effort.
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
*****************************************
 | 
			
		||||
 | 
			
		||||
Installation :
 | 
			
		||||
 | 
			
		||||
BTL uses cmake / ctest:
 | 
			
		||||
 | 
			
		||||
1 - create a build directory:
 | 
			
		||||
 | 
			
		||||
  $ mkdir build
 | 
			
		||||
  $ cd build
 | 
			
		||||
 | 
			
		||||
2 - configure:
 | 
			
		||||
 | 
			
		||||
  $ ccmake ..
 | 
			
		||||
 | 
			
		||||
3 - run the bench using ctest:
 | 
			
		||||
 | 
			
		||||
  $ ctest -V
 | 
			
		||||
 | 
			
		||||
You can run the benchmarks only on libraries matching a given regular expression:
 | 
			
		||||
  ctest -V -R <regexp>
 | 
			
		||||
For instance:
 | 
			
		||||
  ctest -V -R eigen2
 | 
			
		||||
 | 
			
		||||
You can also select a given set of actions defining the environment variable BTL_CONFIG this way:
 | 
			
		||||
  BTL_CONFIG="-a action1{:action2}*" ctest -V
 | 
			
		||||
An exemple:
 | 
			
		||||
  BTL_CONFIG="-a axpy:vector_matrix:trisolve:ata" ctest -V -R eigen2
 | 
			
		||||
 | 
			
		||||
Finally, if bench results already exist (the bench*.dat files) then they merges by keeping the best for each matrix size. If you want to overwrite the previous ones you can simply add the "--overwrite" option:
 | 
			
		||||
  BTL_CONFIG="-a axpy:vector_matrix:trisolve:ata --overwrite" ctest -V -R eigen2
 | 
			
		||||
 | 
			
		||||
4 : Analyze the result. different data files (.dat) are produced in each libs directories.
 | 
			
		||||
 If gnuplot is available, choose a directory name in the data directory to store the results and type:
 | 
			
		||||
        $ cd data
 | 
			
		||||
        $ mkdir my_directory
 | 
			
		||||
        $ cp ../libs/*/*.dat my_directory
 | 
			
		||||
 Build the data utilities in this (data) directory
 | 
			
		||||
        make
 | 
			
		||||
 Then you can look the raw data,
 | 
			
		||||
        go_mean my_directory
 | 
			
		||||
 or smooth the data first :
 | 
			
		||||
	smooth_all.sh my_directory
 | 
			
		||||
	go_mean my_directory_smooth
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
*************************************************
 | 
			
		||||
 | 
			
		||||
Files and directories :
 | 
			
		||||
 | 
			
		||||
 generic_bench : all the bench sources common to all libraries
 | 
			
		||||
 | 
			
		||||
 actions : sources for different action wrappers (axpy, matrix-matrix product) to be tested.
 | 
			
		||||
 | 
			
		||||
 libs/* : bench sources specific to each tested libraries.
 | 
			
		||||
 | 
			
		||||
 machine_dep : directory used to store machine specific Makefile.in
 | 
			
		||||
 | 
			
		||||
 data : directory used to store gnuplot scripts and data analysis utilities
 | 
			
		||||
 | 
			
		||||
**************************************************
 | 
			
		||||
 | 
			
		||||
Principles : the code modularity is achieved by defining two concepts :
 | 
			
		||||
 | 
			
		||||
 ****** Action concept : This is a class defining which kind
 | 
			
		||||
  of test must be performed (e.g. a matrix_vector_product).
 | 
			
		||||
	An Action should define the following methods :
 | 
			
		||||
 | 
			
		||||
        *** Ctor using the size of the problem (matrix or vector size) as an argument
 | 
			
		||||
	    Action action(size);
 | 
			
		||||
        *** initialize : this method initialize the calculation (e.g. initialize the matrices and vectors arguments)
 | 
			
		||||
	    action.initialize();
 | 
			
		||||
	*** calculate : this method actually launch the calculation to be benchmarked
 | 
			
		||||
	    action.calculate;
 | 
			
		||||
	*** nb_op_base() : this method returns the complexity of the calculate method (allowing the mflops evaluation)
 | 
			
		||||
        *** name() : this method returns the name of the action (std::string)
 | 
			
		||||
 | 
			
		||||
 ****** Interface concept : This is a class or namespace defining how to use a given library and
 | 
			
		||||
  its specific containers (matrix and vector). Up to now an interface should following types
 | 
			
		||||
 | 
			
		||||
	*** real_type : kind of float to be used (float or double)
 | 
			
		||||
	*** stl_vector : must correspond to std::vector<real_type>
 | 
			
		||||
	*** stl_matrix : must correspond to std::vector<stl_vector>
 | 
			
		||||
	*** gene_vector : the vector type for this interface        --> e.g. (real_type *) for the C_interface
 | 
			
		||||
	*** gene_matrix : the matrix type for this interface        --> e.g. (gene_vector *) for the C_interface
 | 
			
		||||
 | 
			
		||||
	+ the following common methods
 | 
			
		||||
 | 
			
		||||
        *** free_matrix(gene_matrix & A, int N)  dealocation of a N sized gene_matrix A
 | 
			
		||||
        *** free_vector(gene_vector & B)  dealocation of a N sized gene_vector B
 | 
			
		||||
        *** matrix_from_stl(gene_matrix & A, stl_matrix & A_stl) copy the content of an stl_matrix A_stl into a gene_matrix A.
 | 
			
		||||
	     The allocation of A is done in this function.
 | 
			
		||||
	*** vector_to_stl(gene_vector & B, stl_vector & B_stl)  copy the content of an stl_vector B_stl into a gene_vector B.
 | 
			
		||||
	     The allocation of B is done in this function.
 | 
			
		||||
        *** matrix_to_stl(gene_matrix & A, stl_matrix & A_stl) copy the content of an gene_matrix A into an stl_matrix A_stl.
 | 
			
		||||
             The size of A_STL must corresponds to the size of A.
 | 
			
		||||
        *** vector_to_stl(gene_vector & A, stl_vector & A_stl) copy the content of an gene_vector A into an stl_vector A_stl.
 | 
			
		||||
             The size of B_STL must corresponds to the size of B.
 | 
			
		||||
	*** copy_matrix(gene_matrix & source, gene_matrix & cible, int N) : copy the content of source in cible. Both source
 | 
			
		||||
		and cible must be sized NxN.
 | 
			
		||||
	*** copy_vector(gene_vector & source, gene_vector & cible, int N) : copy the content of source in cible. Both source
 | 
			
		||||
 		and cible must be sized N.
 | 
			
		||||
 | 
			
		||||
	and the following method corresponding to the action one wants to be benchmarked :
 | 
			
		||||
 | 
			
		||||
	***  matrix_vector_product(const gene_matrix & A, const gene_vector & B, gene_vector & X, int N)
 | 
			
		||||
	***  matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N)
 | 
			
		||||
        ***  ata_product(const gene_matrix & A, gene_matrix & X, int N)
 | 
			
		||||
	***  aat_product(const gene_matrix & A, gene_matrix & X, int N)
 | 
			
		||||
        ***  axpy(real coef, const gene_vector & X, gene_vector & Y, int N)
 | 
			
		||||
 | 
			
		||||
 The bench algorithm (generic_bench/bench.hh) is templated with an action itself templated with
 | 
			
		||||
 an interface. A typical main.cpp source stored in a given library directory libs/A_LIB
 | 
			
		||||
 looks like :
 | 
			
		||||
 | 
			
		||||
 bench< AN_ACTION < AN_INTERFACE > >( 10 , 1000 , 50 ) ;
 | 
			
		||||
 | 
			
		||||
 this function will produce XY data file containing measured  mflops as a function of the size for 50
 | 
			
		||||
 sizes between 10 and 10000.
 | 
			
		||||
 | 
			
		||||
 This algorithm can be adapted by providing a given Perf_Analyzer object which determines how the time
 | 
			
		||||
 measurements must be done. For example, the X86_Perf_Analyzer use the asm rdtsc function and provides
 | 
			
		||||
 a very fast and accurate (but less portable) timing method. The default is the Portable_Perf_Analyzer
 | 
			
		||||
 so
 | 
			
		||||
 | 
			
		||||
 bench< AN_ACTION < AN_INTERFACE > >( 10 , 1000 , 50 ) ;
 | 
			
		||||
 | 
			
		||||
 is equivalent to
 | 
			
		||||
 | 
			
		||||
 bench< Portable_Perf_Analyzer,AN_ACTION < AN_INTERFACE > >( 10 , 1000 , 50 ) ;
 | 
			
		||||
 | 
			
		||||
 If your system supports it we suggest to use a mixed implementation (X86_perf_Analyzer+Portable_Perf_Analyzer).
 | 
			
		||||
 replace
 | 
			
		||||
     bench<Portable_Perf_Analyzer,Action>(size_min,size_max,nb_point);
 | 
			
		||||
 with
 | 
			
		||||
     bench<Mixed_Perf_Analyzer,Action>(size_min,size_max,nb_point);
 | 
			
		||||
 in generic/bench.hh
 | 
			
		||||
 | 
			
		||||
.
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										145
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_aat_product.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										145
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_aat_product.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,145 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_aat_product.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_AAT_PRODUCT
 | 
			
		||||
#define ACTION_AAT_PRODUCT
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_aat_product {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_aat_product( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_aat_product Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(X_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_aat_product( const  Action_aat_product & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_aat_product Copy Ctor");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_aat_product( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_aat_product Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "aat_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return double(_size)*double(_size)*double(_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
 | 
			
		||||
      Interface::aat_product(A,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    if (_size>128) return;
 | 
			
		||||
    // calculation check
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::aat_product(A_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-6){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(1);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										145
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_ata_product.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										145
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_ata_product.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,145 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_ata_product.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_ATA_PRODUCT
 | 
			
		||||
#define ACTION_ATA_PRODUCT
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_ata_product {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_ata_product( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_ata_product Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(X_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_ata_product( const  Action_ata_product & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_ata_product Copy Ctor");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_ata_product( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_ata_product Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "ata_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 2.0*_size*_size*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
 | 
			
		||||
      Interface::ata_product(A,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    if (_size>128) return;
 | 
			
		||||
    // calculation check
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::ata_product(A_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-6){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(1);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										134
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_atv_product.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										134
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_atv_product.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,134 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_atv_product.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_ATV_PRODUCT
 | 
			
		||||
#define ACTION_ATV_PRODUCT
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_atv_product {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  Action_atv_product( int size ) : _size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_atv_product Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_vector<null_function>(X_stl,_size);
 | 
			
		||||
    init_vector<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(X_ref,X_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(B,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
  Action_atv_product( const  Action_atv_product & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_atv_product Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  ~Action_atv_product( void )
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_atv_product Dtor");
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_vector(B);
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_vector(B_ref);
 | 
			
		||||
    Interface::free_vector(X_ref);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline std::string name() { return "atv_" + Interface::name(); }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ) { return 2.0*_size*_size; }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_vector(B_ref,B,_size);
 | 
			
		||||
    Interface::copy_vector(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void calculate( void ) {
 | 
			
		||||
    BTL_ASM_COMMENT("begin atv");
 | 
			
		||||
    Interface::atv_product(A,B,X,_size);
 | 
			
		||||
    BTL_ASM_COMMENT("end atv");
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void )
 | 
			
		||||
  {
 | 
			
		||||
    if (_size>128) return;
 | 
			
		||||
    Interface::vector_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::atv_product(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-6){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(1);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_vector B_stl;
 | 
			
		||||
  typename Interface::stl_vector X_stl;
 | 
			
		||||
  typename Interface::stl_vector resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_vector B_ref;
 | 
			
		||||
  typename Interface::gene_vector X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_vector B;
 | 
			
		||||
  typename Interface::gene_vector X;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										127
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_axpby.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										127
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_axpby.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,127 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_axpby.hh
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_AXPBY
 | 
			
		||||
#define ACTION_AXPBY
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_axpby {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
  Action_axpby( int size ):_alpha(0.5),_beta(0.95),_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_axpby Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL vector initialization
 | 
			
		||||
    init_vector<pseudo_random>(X_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(Y_stl,_size);
 | 
			
		||||
    init_vector<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::vector_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(Y_ref,Y_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(Y,Y_stl);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
  Action_axpby( const  Action_axpby & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_axpby Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
  ~Action_axpby( void ){
 | 
			
		||||
    MESSAGE("Action_axpby Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
    Interface::free_vector(X_ref);
 | 
			
		||||
    Interface::free_vector(Y_ref);
 | 
			
		||||
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
    Interface::free_vector(Y);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "axpby_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 3.0*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    Interface::copy_vector(X_ref,X,_size);
 | 
			
		||||
    Interface::copy_vector(Y_ref,Y,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
    BTL_ASM_COMMENT("mybegin axpby");
 | 
			
		||||
    Interface::axpby(_alpha,X,_beta,Y,_size);
 | 
			
		||||
    BTL_ASM_COMMENT("myend axpby");
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    if (_size>128) return;
 | 
			
		||||
    // calculation check
 | 
			
		||||
    Interface::vector_to_stl(Y,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::axpby(_alpha,X_stl,_beta,Y_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(Y_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-6){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(2);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_vector X_stl;
 | 
			
		||||
  typename Interface::stl_vector Y_stl;
 | 
			
		||||
  typename Interface::stl_vector resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_vector X_ref;
 | 
			
		||||
  typename Interface::gene_vector Y_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_vector X;
 | 
			
		||||
  typename Interface::gene_vector Y;
 | 
			
		||||
 | 
			
		||||
  typename Interface::real_type _alpha;
 | 
			
		||||
  typename Interface::real_type _beta;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										139
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_axpy.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										139
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_axpy.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,139 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_axpy.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_AXPY
 | 
			
		||||
#define ACTION_AXPY
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_axpy {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_axpy( int size ):_coef(1.0),_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_axpy Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL vector initialization
 | 
			
		||||
 | 
			
		||||
    init_vector<pseudo_random>(X_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(Y_stl,_size);
 | 
			
		||||
    init_vector<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    Interface::vector_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(Y_ref,Y_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(Y,Y_stl);
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_axpy( const  Action_axpy & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_axpy Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_axpy( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_axpy Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
 | 
			
		||||
    Interface::free_vector(X_ref);
 | 
			
		||||
    Interface::free_vector(Y_ref);
 | 
			
		||||
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
    Interface::free_vector(Y);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "axpy_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 2.0*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    Interface::copy_vector(X_ref,X,_size);
 | 
			
		||||
    Interface::copy_vector(Y_ref,Y,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
    BTL_ASM_COMMENT("mybegin axpy");
 | 
			
		||||
    Interface::axpy(_coef,X,Y,_size);
 | 
			
		||||
    BTL_ASM_COMMENT("myend axpy");
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    if (_size>128) return;
 | 
			
		||||
    // calculation check
 | 
			
		||||
 | 
			
		||||
    Interface::vector_to_stl(Y,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::axpy(_coef,X_stl,Y_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(Y_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-6){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(0);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_vector X_stl;
 | 
			
		||||
  typename Interface::stl_vector Y_stl;
 | 
			
		||||
  typename Interface::stl_vector resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_vector X_ref;
 | 
			
		||||
  typename Interface::gene_vector Y_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_vector X;
 | 
			
		||||
  typename Interface::gene_vector Y;
 | 
			
		||||
 | 
			
		||||
  typename Interface::real_type _coef;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										128
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_cholesky.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										128
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_cholesky.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,128 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_cholesky.hh
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_CHOLESKY
 | 
			
		||||
#define ACTION_CHOLESKY
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_cholesky {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_cholesky( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_cholesky Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL mat/vec initialization
 | 
			
		||||
    init_matrix_symm<pseudo_random>(X_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(C_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // make sure X is invertible
 | 
			
		||||
    for (int i=0; i<_size; ++i)
 | 
			
		||||
      X_stl[i][i] = std::abs(X_stl[i][i]) * 1e2 + 100;
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(C,C_stl);
 | 
			
		||||
 | 
			
		||||
    _cost = 0;
 | 
			
		||||
    for (int j=0; j<_size; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      double r = std::max(_size - j -1,0);
 | 
			
		||||
      _cost += 2*(r*j+r+j);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_cholesky( const  Action_cholesky & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_cholesky Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_cholesky( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_cholesky Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
    Interface::free_matrix(C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "cholesky_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return _cost;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::cholesky(X,C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    // calculation check
 | 
			
		||||
//     STL_interface<typename Interface::real_type>::cholesky(X_stl,C_stl,_size);
 | 
			
		||||
//
 | 
			
		||||
//     typename Interface::real_type error=
 | 
			
		||||
//       STL_interface<typename Interface::real_type>::norm_diff(C_stl,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     if (error>1.e-6){
 | 
			
		||||
//       INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
//       exit(0);
 | 
			
		||||
//     }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix C_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
  typename Interface::gene_matrix C;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
  double _cost;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										128
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_ger.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										128
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_ger.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,128 @@
 | 
			
		||||
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_GER
 | 
			
		||||
#define ACTION_GER
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_ger {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
  BTL_DONT_INLINE Action_ger( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_ger Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
    typename Interface::stl_matrix tmp;
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(X_stl,_size);
 | 
			
		||||
    init_vector<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(B,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
  Action_ger( const  Action_ger & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_ger Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
  BTL_DONT_INLINE ~Action_ger( void ){
 | 
			
		||||
    MESSAGE("Action_ger Dtor");
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_vector(B);
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_vector(B_ref);
 | 
			
		||||
    Interface::free_vector(X_ref);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "ger_" + Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 2.0*_size*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE  void initialize( void ){
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_vector(B_ref,B,_size);
 | 
			
		||||
    Interface::copy_vector(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void calculate( void ) {
 | 
			
		||||
    BTL_ASM_COMMENT("#begin ger");
 | 
			
		||||
    Interface::ger(A,B,X,_size);
 | 
			
		||||
    BTL_ASM_COMMENT("end ger");
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void check_result( void ){
 | 
			
		||||
    // calculation check
 | 
			
		||||
    Interface::vector_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::ger(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-3){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
//       exit(0);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_vector B_stl;
 | 
			
		||||
  typename Interface::stl_vector X_stl;
 | 
			
		||||
  typename Interface::stl_vector resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_vector B_ref;
 | 
			
		||||
  typename Interface::gene_vector X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_vector B;
 | 
			
		||||
  typename Interface::gene_vector X;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										233
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_hessenberg.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										233
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_hessenberg.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,233 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_hessenberg.hh
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_HESSENBERG
 | 
			
		||||
#define ACTION_HESSENBERG
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_hessenberg {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_hessenberg( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_hessenberg Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL vector initialization
 | 
			
		||||
    init_matrix<pseudo_random>(X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    init_matrix<null_function>(C_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(C,C_stl);
 | 
			
		||||
 | 
			
		||||
    _cost = 0;
 | 
			
		||||
    for (int j=0; j<_size-2; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      double r = std::max(0,_size-j-1);
 | 
			
		||||
      double b = std::max(0,_size-j-2);
 | 
			
		||||
      _cost += 6 + 3*b + r*r*4 + r*_size*4;
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_hessenberg( const  Action_hessenberg & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_hessenberg Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_hessenberg( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_hessenberg Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
    Interface::free_matrix(C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "hessenberg_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return _cost;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::hessenberg(X,C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    // calculation check
 | 
			
		||||
    Interface::matrix_to_stl(C,resu_stl);
 | 
			
		||||
 | 
			
		||||
//     STL_interface<typename Interface::real_type>::hessenberg(X_stl,C_stl,_size);
 | 
			
		||||
//
 | 
			
		||||
//     typename Interface::real_type error=
 | 
			
		||||
//       STL_interface<typename Interface::real_type>::norm_diff(C_stl,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     if (error>1.e-6){
 | 
			
		||||
//       INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
//       exit(0);
 | 
			
		||||
//     }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix C_stl;
 | 
			
		||||
  typename Interface::stl_matrix resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
  typename Interface::gene_matrix C;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
  double _cost;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_tridiagonalization {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_tridiagonalization( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_tridiagonalization Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL vector initialization
 | 
			
		||||
    init_matrix<pseudo_random>(X_stl,_size);
 | 
			
		||||
    
 | 
			
		||||
    for(int i=0; i<_size; ++i)
 | 
			
		||||
    {
 | 
			
		||||
      for(int j=0; j<i; ++j)
 | 
			
		||||
        X_stl[i][j] = X_stl[j][i];
 | 
			
		||||
    }
 | 
			
		||||
    
 | 
			
		||||
    init_matrix<null_function>(C_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(C,C_stl);
 | 
			
		||||
 | 
			
		||||
    _cost = 0;
 | 
			
		||||
    for (int j=0; j<_size-2; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      double r = std::max(0,_size-j-1);
 | 
			
		||||
      double b = std::max(0,_size-j-2);
 | 
			
		||||
      _cost += 6. + 3.*b + r*r*8.;
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_tridiagonalization( const  Action_tridiagonalization & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_tridiagonalization Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_tridiagonalization( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_tridiagonalization Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
    Interface::free_matrix(C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void ) { return "tridiagonalization_"+Interface::name(); }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return _cost;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::tridiagonalization(X,C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    // calculation check
 | 
			
		||||
    Interface::matrix_to_stl(C,resu_stl);
 | 
			
		||||
 | 
			
		||||
//     STL_interface<typename Interface::real_type>::tridiagonalization(X_stl,C_stl,_size);
 | 
			
		||||
//
 | 
			
		||||
//     typename Interface::real_type error=
 | 
			
		||||
//       STL_interface<typename Interface::real_type>::norm_diff(C_stl,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     if (error>1.e-6){
 | 
			
		||||
//       INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
//       exit(0);
 | 
			
		||||
//     }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix C_stl;
 | 
			
		||||
  typename Interface::stl_matrix resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
  typename Interface::gene_matrix C;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
  double _cost;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										124
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_lu_decomp.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										124
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_lu_decomp.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,124 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_lu_decomp.hh
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_LU_DECOMP
 | 
			
		||||
#define ACTION_LU_DECOMP
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_lu_decomp {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_lu_decomp( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_lu_decomp Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL vector initialization
 | 
			
		||||
    init_matrix<pseudo_random>(X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    init_matrix<null_function>(C_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(C,C_stl);
 | 
			
		||||
 | 
			
		||||
    _cost = 2.0*size*size*size/3.0 + size*size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_lu_decomp( const  Action_lu_decomp & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_lu_decomp Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_lu_decomp( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_lu_decomp Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
    Interface::free_matrix(C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "complete_lu_decomp_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return _cost;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::lu_decomp(X,C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    // calculation check
 | 
			
		||||
    Interface::matrix_to_stl(C,resu_stl);
 | 
			
		||||
 | 
			
		||||
//     STL_interface<typename Interface::real_type>::lu_decomp(X_stl,C_stl,_size);
 | 
			
		||||
//
 | 
			
		||||
//     typename Interface::real_type error=
 | 
			
		||||
//       STL_interface<typename Interface::real_type>::norm_diff(C_stl,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     if (error>1.e-6){
 | 
			
		||||
//       INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
//       exit(0);
 | 
			
		||||
//     }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix C_stl;
 | 
			
		||||
  typename Interface::stl_matrix resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
  typename Interface::gene_matrix C;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
  double _cost;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										136
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_lu_solve.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										136
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_lu_solve.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,136 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_lu_solve.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef ACTION_LU_SOLVE
 | 
			
		||||
#define ACTION_LU_SOLVE
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_lu_solve 
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "lu_solve_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
  static double nb_op_base(int size){
 | 
			
		||||
    return 2.0*size*size*size/3.0;  // questionable but not really important
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static double calculate( int nb_calc, int size ) {
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
    
 | 
			
		||||
    typename Interface::stl_matrix A_stl;
 | 
			
		||||
    typename Interface::stl_vector B_stl;
 | 
			
		||||
    typename Interface::stl_vector X_stl;
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,size);
 | 
			
		||||
    init_vector<pseudo_random>(B_stl,size);
 | 
			
		||||
    init_vector<null_function>(X_stl,size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    typename Interface::gene_matrix A;
 | 
			
		||||
    typename Interface::gene_vector B;
 | 
			
		||||
    typename Interface::gene_vector X;
 | 
			
		||||
 | 
			
		||||
    typename Interface::gene_matrix LU; 
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(B,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(LU,A_stl);
 | 
			
		||||
  
 | 
			
		||||
    // local variable :
 | 
			
		||||
 | 
			
		||||
    typename Interface::Pivot_Vector pivot; // pivot vector
 | 
			
		||||
    Interface::new_Pivot_Vector(pivot,size);
 | 
			
		||||
    
 | 
			
		||||
    // timer utilities
 | 
			
		||||
 | 
			
		||||
    Portable_Timer chronos;
 | 
			
		||||
 | 
			
		||||
    // time measurement
 | 
			
		||||
 | 
			
		||||
    chronos.start();
 | 
			
		||||
    
 | 
			
		||||
    for (int ii=0;ii<nb_calc;ii++){
 | 
			
		||||
 | 
			
		||||
      // LU factorization
 | 
			
		||||
      Interface::copy_matrix(A,LU,size);
 | 
			
		||||
      Interface::LU_factor(LU,pivot,size);
 | 
			
		||||
      
 | 
			
		||||
      // LU solve
 | 
			
		||||
 | 
			
		||||
      Interface::LU_solve(LU,pivot,B,X,size);
 | 
			
		||||
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // Time stop
 | 
			
		||||
 | 
			
		||||
    chronos.stop();
 | 
			
		||||
 | 
			
		||||
    double time=chronos.user_time();
 | 
			
		||||
  
 | 
			
		||||
    // check result :
 | 
			
		||||
 | 
			
		||||
    typename Interface::stl_vector B_new_stl(size);
 | 
			
		||||
    Interface::vector_to_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::matrix_vector_product(A_stl,X_stl,B_new_stl,size); 
 | 
			
		||||
  
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(B_stl,B_new_stl);
 | 
			
		||||
    
 | 
			
		||||
    if (error>1.e-5){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      STL_interface<typename Interface::real_type>::display_vector(B_stl);
 | 
			
		||||
      STL_interface<typename Interface::real_type>::display_vector(B_new_stl);
 | 
			
		||||
      exit(0);
 | 
			
		||||
    }
 | 
			
		||||
    
 | 
			
		||||
    // deallocation and return time
 | 
			
		||||
    
 | 
			
		||||
    Interface::free_matrix(A,size);
 | 
			
		||||
    Interface::free_vector(B);
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
    Interface::free_Pivot_Vector(pivot);
 | 
			
		||||
 | 
			
		||||
    return time;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
  
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
@@ -0,0 +1,150 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_matrix_matrix_product.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_MATRIX_MATRIX_PRODUCT
 | 
			
		||||
#define ACTION_MATRIX_MATRIX_PRODUCT
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_matrix_matrix_product {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_matrix_matrix_product( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_matrix_matrix_product Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_matrix<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(X_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(B,B_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_matrix_matrix_product( const  Action_matrix_matrix_product & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_matrix_matrix_product Copy Ctor");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_matrix_matrix_product( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_matrix_matrix_product Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_matrix(B,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_matrix(B_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "matrix_matrix_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 2.0*_size*_size*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_matrix(B_ref,B,_size);
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::matrix_matrix_product(A,B,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
 | 
			
		||||
    // calculation check
 | 
			
		||||
    if (_size<200)
 | 
			
		||||
    {
 | 
			
		||||
      Interface::matrix_to_stl(X,resu_stl);
 | 
			
		||||
      STL_interface<typename Interface::real_type>::matrix_matrix_product(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
      typename Interface::real_type error=
 | 
			
		||||
        STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
      if (error>1.e-6){
 | 
			
		||||
        INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
        exit(1);
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_matrix B_stl;
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_matrix B_ref;
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_matrix B;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
@@ -0,0 +1,152 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_matrix_matrix_product_bis.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_MATRIX_MATRIX_PRODUCT_BIS
 | 
			
		||||
#define ACTION_MATRIX_MATRIX_PRODUCT_BIS
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include "STL_timer.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init_function.hh"
 | 
			
		||||
#include "init_vector.hh"
 | 
			
		||||
#include "init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_matrix_matrix_product_bis {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "matrix_matrix_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static double nb_op_base(int size){
 | 
			
		||||
    return 2.0*size*size*size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static double calculate( int nb_calc, int size ) {
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    typename Interface::stl_matrix A_stl;
 | 
			
		||||
    typename Interface::stl_matrix B_stl;
 | 
			
		||||
    typename Interface::stl_matrix X_stl;
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,size);
 | 
			
		||||
    init_matrix<pseudo_random>(B_stl,size);
 | 
			
		||||
    init_matrix<null_function>(X_stl,size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    typename Interface::gene_matrix A_ref;
 | 
			
		||||
    typename Interface::gene_matrix B_ref;
 | 
			
		||||
    typename Interface::gene_matrix X_ref;
 | 
			
		||||
 | 
			
		||||
    typename Interface::gene_matrix A;
 | 
			
		||||
    typename Interface::gene_matrix B;
 | 
			
		||||
    typename Interface::gene_matrix X;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(B,B_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
    // STL_timer utilities
 | 
			
		||||
 | 
			
		||||
    STL_timer chronos;
 | 
			
		||||
 | 
			
		||||
    // Baseline evaluation
 | 
			
		||||
 | 
			
		||||
    chronos.start_baseline(nb_calc);
 | 
			
		||||
 | 
			
		||||
    do {
 | 
			
		||||
 | 
			
		||||
      Interface::copy_matrix(A_ref,A,size);
 | 
			
		||||
      Interface::copy_matrix(B_ref,B,size);
 | 
			
		||||
      Interface::copy_matrix(X_ref,X,size);
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
      //      Interface::matrix_matrix_product(A,B,X,size); This line must be commented !!!!
 | 
			
		||||
    }
 | 
			
		||||
    while(chronos.check());
 | 
			
		||||
 | 
			
		||||
    chronos.report(true);
 | 
			
		||||
 | 
			
		||||
    // Time measurement
 | 
			
		||||
 | 
			
		||||
    chronos.start(nb_calc);
 | 
			
		||||
 | 
			
		||||
    do {
 | 
			
		||||
 | 
			
		||||
      Interface::copy_matrix(A_ref,A,size);
 | 
			
		||||
      Interface::copy_matrix(B_ref,B,size);
 | 
			
		||||
      Interface::copy_matrix(X_ref,X,size);
 | 
			
		||||
 | 
			
		||||
      Interface::matrix_matrix_product(A,B,X,size); // here it is not commented !!!!
 | 
			
		||||
    }
 | 
			
		||||
    while(chronos.check());
 | 
			
		||||
 | 
			
		||||
    chronos.report(true);
 | 
			
		||||
 | 
			
		||||
    double time=chronos.calculated_time/2000.0;
 | 
			
		||||
 | 
			
		||||
    // calculation check
 | 
			
		||||
 | 
			
		||||
    typename Interface::stl_matrix resu_stl(size);
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::matrix_matrix_product(A_stl,B_stl,X_stl,size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-6){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(1);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // deallocation and return time
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A,size);
 | 
			
		||||
    Interface::free_matrix(B,size);
 | 
			
		||||
    Interface::free_matrix(X,size);
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A_ref,size);
 | 
			
		||||
    Interface::free_matrix(B_ref,size);
 | 
			
		||||
    Interface::free_matrix(X_ref,size);
 | 
			
		||||
 | 
			
		||||
    return time;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
@@ -0,0 +1,153 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_matrix_vector_product.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_MATRIX_VECTOR_PRODUCT
 | 
			
		||||
#define ACTION_MATRIX_VECTOR_PRODUCT
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_matrix_vector_product {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE Action_matrix_vector_product( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_matrix_vector_product Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_vector<null_function>(X_stl,_size);
 | 
			
		||||
    init_vector<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(B,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_matrix_vector_product( const  Action_matrix_vector_product & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_matrix_vector_product Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE ~Action_matrix_vector_product( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_matrix_vector_product Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_vector(B);
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_vector(B_ref);
 | 
			
		||||
    Interface::free_vector(X_ref);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "matrix_vector_" + Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 2.0*_size*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE  void initialize( void ){
 | 
			
		||||
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_vector(B_ref,B,_size);
 | 
			
		||||
    Interface::copy_vector(X_ref,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void calculate( void ) {
 | 
			
		||||
      BTL_ASM_COMMENT("#begin matrix_vector_product");
 | 
			
		||||
      Interface::matrix_vector_product(A,B,X,_size);
 | 
			
		||||
      BTL_ASM_COMMENT("end matrix_vector_product");
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void check_result( void ){
 | 
			
		||||
 | 
			
		||||
    // calculation check
 | 
			
		||||
 | 
			
		||||
    Interface::vector_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::matrix_vector_product(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-5){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(0);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_vector B_stl;
 | 
			
		||||
  typename Interface::stl_vector X_stl;
 | 
			
		||||
  typename Interface::stl_vector resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_vector B_ref;
 | 
			
		||||
  typename Interface::gene_vector X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_vector B;
 | 
			
		||||
  typename Interface::gene_vector X;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										125
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_partial_lu.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										125
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_partial_lu.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,125 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_lu_decomp.hh
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_PARTIAL_LU
 | 
			
		||||
#define ACTION_PARTIAL_LU
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_partial_lu {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_partial_lu( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_partial_lu Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL vector initialization
 | 
			
		||||
    init_matrix<pseudo_random>(X_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(C_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // make sure X is invertible
 | 
			
		||||
    for (int i=0; i<_size; ++i)
 | 
			
		||||
      X_stl[i][i] = X_stl[i][i] * 1e2 + 1;
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
    Interface::matrix_from_stl(C,C_stl);
 | 
			
		||||
 | 
			
		||||
    _cost = 2.0*size*size*size/3.0 + size*size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_partial_lu( const  Action_partial_lu & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_partial_lu Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_partial_lu( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_partial_lu Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
    Interface::free_matrix(C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "partial_lu_decomp_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return _cost;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::partial_lu_decomp(X,C,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
    // calculation check
 | 
			
		||||
//     Interface::matrix_to_stl(C,resu_stl);
 | 
			
		||||
 | 
			
		||||
//     STL_interface<typename Interface::real_type>::lu_decomp(X_stl,C_stl,_size);
 | 
			
		||||
//
 | 
			
		||||
//     typename Interface::real_type error=
 | 
			
		||||
//       STL_interface<typename Interface::real_type>::norm_diff(C_stl,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     if (error>1.e-6){
 | 
			
		||||
//       INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
//       exit(0);
 | 
			
		||||
//     }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix C_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
  typename Interface::gene_matrix C;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
  double _cost;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										116
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_rot.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										116
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_rot.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,116 @@
 | 
			
		||||
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_ROT
 | 
			
		||||
#define ACTION_ROT
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_rot {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
  BTL_DONT_INLINE Action_rot( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_rot Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
    typename Interface::stl_matrix tmp;
 | 
			
		||||
    init_vector<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(B_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::vector_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(A,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(B,B_stl);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
  Action_rot( const  Action_rot & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_rot Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
  BTL_DONT_INLINE ~Action_rot( void ){
 | 
			
		||||
    MESSAGE("Action_rot Dtor");
 | 
			
		||||
    Interface::free_vector(A);
 | 
			
		||||
    Interface::free_vector(B);
 | 
			
		||||
    Interface::free_vector(A_ref);
 | 
			
		||||
    Interface::free_vector(B_ref);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "rot_" + Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 6.0*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE  void initialize( void ){
 | 
			
		||||
    Interface::copy_vector(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_vector(B_ref,B,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void calculate( void ) {
 | 
			
		||||
    BTL_ASM_COMMENT("#begin rot");
 | 
			
		||||
    Interface::rot(A,B,0.5,0.6,_size);
 | 
			
		||||
    BTL_ASM_COMMENT("end rot");
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void check_result( void ){
 | 
			
		||||
    // calculation check
 | 
			
		||||
//     Interface::vector_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
//     STL_interface<typename Interface::real_type>::rot(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
//     typename Interface::real_type error=
 | 
			
		||||
//       STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
//     if (error>1.e-3){
 | 
			
		||||
//       INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
//       exit(0);
 | 
			
		||||
//     }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_vector A_stl;
 | 
			
		||||
  typename Interface::stl_vector B_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_vector A_ref;
 | 
			
		||||
  typename Interface::gene_vector B_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_vector A;
 | 
			
		||||
  typename Interface::gene_vector B;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										139
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_symv.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										139
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_symv.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,139 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_symv.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_SYMV
 | 
			
		||||
#define ACTION_SYMV
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_symv {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE Action_symv( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_symv Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
    init_matrix_symm<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_vector<null_function>(X_stl,_size);
 | 
			
		||||
    init_vector<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(B,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_symv( const  Action_symv & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_symv Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
  BTL_DONT_INLINE ~Action_symv( void ){
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_vector(B);
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_vector(B_ref);
 | 
			
		||||
    Interface::free_vector(X_ref);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "symv_" + Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 2.0*_size*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE  void initialize( void ){
 | 
			
		||||
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_vector(B_ref,B,_size);
 | 
			
		||||
    Interface::copy_vector(X_ref,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void calculate( void ) {
 | 
			
		||||
      BTL_ASM_COMMENT("#begin symv");
 | 
			
		||||
      Interface::symv(A,B,X,_size);
 | 
			
		||||
      BTL_ASM_COMMENT("end symv");
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void check_result( void ){
 | 
			
		||||
    if (_size>128) return;
 | 
			
		||||
    // calculation check
 | 
			
		||||
    Interface::vector_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::symv(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-5){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(0);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_vector B_stl;
 | 
			
		||||
  typename Interface::stl_vector X_stl;
 | 
			
		||||
  typename Interface::stl_vector resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_vector B_ref;
 | 
			
		||||
  typename Interface::gene_vector X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_vector B;
 | 
			
		||||
  typename Interface::gene_vector X;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										133
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_syr2.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										133
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_syr2.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,133 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_syr2.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_SYR2
 | 
			
		||||
#define ACTION_SYR2
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_syr2 {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE Action_syr2( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
    typename Interface::stl_matrix tmp;
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(X_stl,_size);
 | 
			
		||||
    init_vector<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::vector_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(B,B_stl);
 | 
			
		||||
    Interface::vector_from_stl(X_ref,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
  Action_syr2( const  Action_syr2 & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_syr2 Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
  BTL_DONT_INLINE ~Action_syr2( void ){
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_vector(B);
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_vector(B_ref);
 | 
			
		||||
    Interface::free_vector(X_ref);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "syr2_" + Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return 2.0*_size*_size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE  void initialize( void ){
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_vector(B_ref,B,_size);
 | 
			
		||||
    Interface::copy_vector(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void calculate( void ) {
 | 
			
		||||
      BTL_ASM_COMMENT("#begin syr2");
 | 
			
		||||
      Interface::syr2(A,B,X,_size);
 | 
			
		||||
      BTL_ASM_COMMENT("end syr2");
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE void check_result( void ){
 | 
			
		||||
    // calculation check
 | 
			
		||||
    Interface::vector_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::syr2(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-3){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
//       exit(0);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_vector B_stl;
 | 
			
		||||
  typename Interface::stl_vector X_stl;
 | 
			
		||||
  typename Interface::stl_vector resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_vector B_ref;
 | 
			
		||||
  typename Interface::gene_vector X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_vector B;
 | 
			
		||||
  typename Interface::gene_vector X;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										137
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_trisolve.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										137
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_trisolve.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,137 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_trisolve.hh
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_TRISOLVE
 | 
			
		||||
#define ACTION_TRISOLVE
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_trisolve {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_trisolve( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_trisolve Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL vector initialization
 | 
			
		||||
    init_matrix<pseudo_random>(L_stl,_size);
 | 
			
		||||
    init_vector<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_vector<null_function>(X_stl,_size);
 | 
			
		||||
    for (int j=0; j<_size; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      for (int i=0; i<j; ++i)
 | 
			
		||||
        L_stl[j][i] = 0;
 | 
			
		||||
      L_stl[j][j] += 3;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    init_vector<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
    Interface::matrix_from_stl(L,L_stl);
 | 
			
		||||
    Interface::vector_from_stl(X,X_stl);
 | 
			
		||||
    Interface::vector_from_stl(B,B_stl);
 | 
			
		||||
 | 
			
		||||
    _cost = 0;
 | 
			
		||||
    for (int j=0; j<_size; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      _cost += 2*j + 1;
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_trisolve( const  Action_trisolve & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_trisolve Copy Ctor");
 | 
			
		||||
    exit(1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_trisolve( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_trisolve Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
    Interface::free_matrix(L,_size);
 | 
			
		||||
    Interface::free_vector(B);
 | 
			
		||||
    Interface::free_vector(X);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "trisolve_vector_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return _cost;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
    //Interface::copy_vector(X_ref,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::trisolve_lower(L,B,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result(){
 | 
			
		||||
    if (_size>128) return;
 | 
			
		||||
    // calculation check
 | 
			
		||||
    Interface::vector_to_stl(X,resu_stl);
 | 
			
		||||
 | 
			
		||||
    STL_interface<typename Interface::real_type>::trisolve_lower(L_stl,B_stl,X_stl,_size);
 | 
			
		||||
 | 
			
		||||
    typename Interface::real_type error=
 | 
			
		||||
      STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
 | 
			
		||||
    if (error>1.e-4){
 | 
			
		||||
      INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
      exit(2);
 | 
			
		||||
    } //else INFOS("CALCULATION OK...residual=" << error);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix L_stl;
 | 
			
		||||
  typename Interface::stl_vector X_stl;
 | 
			
		||||
  typename Interface::stl_vector B_stl;
 | 
			
		||||
  typename Interface::stl_vector resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix L;
 | 
			
		||||
  typename Interface::gene_vector X;
 | 
			
		||||
  typename Interface::gene_vector B;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
  double _cost;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										165
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_trisolve_matrix.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										165
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_trisolve_matrix.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,165 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_matrix_matrix_product.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_TRISOLVE_MATRIX_PRODUCT
 | 
			
		||||
#define ACTION_TRISOLVE_MATRIX_PRODUCT
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_trisolve_matrix {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_trisolve_matrix( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_trisolve_matrix Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_matrix<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(X_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    for (int j=0; j<_size; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      for (int i=0; i<j; ++i)
 | 
			
		||||
        A_stl[j][i] = 0;
 | 
			
		||||
      A_stl[j][j] += 3;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(B,B_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
    _cost = 0;
 | 
			
		||||
    for (int j=0; j<_size; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      _cost += 2*j + 1;
 | 
			
		||||
    }
 | 
			
		||||
    _cost *= _size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_trisolve_matrix( const  Action_trisolve_matrix & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_trisolve_matrix Copy Ctor");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_trisolve_matrix( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_trisolve_matrix Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_matrix(B,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_matrix(B_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "trisolve_matrix_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return _cost;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_matrix(B_ref,B,_size);
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::trisolve_lower_matrix(A,B,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
 | 
			
		||||
    // calculation check
 | 
			
		||||
 | 
			
		||||
//     Interface::matrix_to_stl(X,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     STL_interface<typename Interface::real_type>::matrix_matrix_product(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
//
 | 
			
		||||
//     typename Interface::real_type error=
 | 
			
		||||
//       STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     if (error>1.e-6){
 | 
			
		||||
//       INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
// //       exit(1);
 | 
			
		||||
//     }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_matrix B_stl;
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_matrix B_ref;
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_matrix B;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
  double _cost;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										165
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_trmm.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										165
									
								
								cs440-acg/ext/eigen/bench/btl/actions/action_trmm.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,165 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  action_matrix_matrix_product.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef ACTION_TRMM
 | 
			
		||||
#define ACTION_TRMM
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "init/init_function.hh"
 | 
			
		||||
#include "init/init_vector.hh"
 | 
			
		||||
#include "init/init_matrix.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Interface>
 | 
			
		||||
class Action_trmm {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  // Ctor
 | 
			
		||||
 | 
			
		||||
  Action_trmm( int size ):_size(size)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Action_trmm Ctor");
 | 
			
		||||
 | 
			
		||||
    // STL matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    init_matrix<pseudo_random>(A_stl,_size);
 | 
			
		||||
    init_matrix<pseudo_random>(B_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(X_stl,_size);
 | 
			
		||||
    init_matrix<null_function>(resu_stl,_size);
 | 
			
		||||
 | 
			
		||||
    for (int j=0; j<_size; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      for (int i=0; i<j; ++i)
 | 
			
		||||
        A_stl[j][i] = 0;
 | 
			
		||||
      A_stl[j][j] += 3;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // generic matrix and vector initialization
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A_ref,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(B_ref,B_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X_ref,X_stl);
 | 
			
		||||
 | 
			
		||||
    Interface::matrix_from_stl(A,A_stl);
 | 
			
		||||
    Interface::matrix_from_stl(B,B_stl);
 | 
			
		||||
    Interface::matrix_from_stl(X,X_stl);
 | 
			
		||||
 | 
			
		||||
    _cost = 0;
 | 
			
		||||
    for (int j=0; j<_size; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      _cost += 2*j + 1;
 | 
			
		||||
    }
 | 
			
		||||
    _cost *= _size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // invalidate copy ctor
 | 
			
		||||
 | 
			
		||||
  Action_trmm( const  Action_trmm & )
 | 
			
		||||
  {
 | 
			
		||||
    INFOS("illegal call to Action_trmm Copy Ctor");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // Dtor
 | 
			
		||||
 | 
			
		||||
  ~Action_trmm( void ){
 | 
			
		||||
 | 
			
		||||
    MESSAGE("Action_trmm Dtor");
 | 
			
		||||
 | 
			
		||||
    // deallocation
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A,_size);
 | 
			
		||||
    Interface::free_matrix(B,_size);
 | 
			
		||||
    Interface::free_matrix(X,_size);
 | 
			
		||||
 | 
			
		||||
    Interface::free_matrix(A_ref,_size);
 | 
			
		||||
    Interface::free_matrix(B_ref,_size);
 | 
			
		||||
    Interface::free_matrix(X_ref,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // action name
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "trmm_"+Interface::name();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double nb_op_base( void ){
 | 
			
		||||
    return _cost;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void initialize( void ){
 | 
			
		||||
 | 
			
		||||
    Interface::copy_matrix(A_ref,A,_size);
 | 
			
		||||
    Interface::copy_matrix(B_ref,B,_size);
 | 
			
		||||
    Interface::copy_matrix(X_ref,X,_size);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void calculate( void ) {
 | 
			
		||||
      Interface::trmm(A,B,X,_size);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void check_result( void ){
 | 
			
		||||
 | 
			
		||||
    // calculation check
 | 
			
		||||
 | 
			
		||||
//     Interface::matrix_to_stl(X,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     STL_interface<typename Interface::real_type>::matrix_matrix_product(A_stl,B_stl,X_stl,_size);
 | 
			
		||||
//
 | 
			
		||||
//     typename Interface::real_type error=
 | 
			
		||||
//       STL_interface<typename Interface::real_type>::norm_diff(X_stl,resu_stl);
 | 
			
		||||
//
 | 
			
		||||
//     if (error>1.e-6){
 | 
			
		||||
//       INFOS("WRONG CALCULATION...residual=" << error);
 | 
			
		||||
// //       exit(1);
 | 
			
		||||
//     }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private :
 | 
			
		||||
 | 
			
		||||
  typename Interface::stl_matrix A_stl;
 | 
			
		||||
  typename Interface::stl_matrix B_stl;
 | 
			
		||||
  typename Interface::stl_matrix X_stl;
 | 
			
		||||
  typename Interface::stl_matrix resu_stl;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A_ref;
 | 
			
		||||
  typename Interface::gene_matrix B_ref;
 | 
			
		||||
  typename Interface::gene_matrix X_ref;
 | 
			
		||||
 | 
			
		||||
  typename Interface::gene_matrix A;
 | 
			
		||||
  typename Interface::gene_matrix B;
 | 
			
		||||
  typename Interface::gene_matrix X;
 | 
			
		||||
 | 
			
		||||
  int _size;
 | 
			
		||||
  double _cost;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										21
									
								
								cs440-acg/ext/eigen/bench/btl/actions/basic_actions.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										21
									
								
								cs440-acg/ext/eigen/bench/btl/actions/basic_actions.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,21 @@
 | 
			
		||||
 | 
			
		||||
#include "action_axpy.hh"
 | 
			
		||||
#include "action_axpby.hh"
 | 
			
		||||
 | 
			
		||||
#include "action_matrix_vector_product.hh"
 | 
			
		||||
#include "action_atv_product.hh"
 | 
			
		||||
 | 
			
		||||
#include "action_matrix_matrix_product.hh"
 | 
			
		||||
// #include "action_ata_product.hh"
 | 
			
		||||
#include "action_aat_product.hh"
 | 
			
		||||
 | 
			
		||||
#include "action_trisolve.hh"
 | 
			
		||||
#include "action_trmm.hh"
 | 
			
		||||
#include "action_symv.hh"
 | 
			
		||||
// #include "action_symm.hh"
 | 
			
		||||
#include "action_syr2.hh"
 | 
			
		||||
#include "action_ger.hh"
 | 
			
		||||
#include "action_rot.hh"
 | 
			
		||||
 | 
			
		||||
// #include "action_lu_solve.hh"
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										32
									
								
								cs440-acg/ext/eigen/bench/btl/data/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										32
									
								
								cs440-acg/ext/eigen/bench/btl/data/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,32 @@
 | 
			
		||||
 | 
			
		||||
ADD_CUSTOM_TARGET(copy_scripts)
 | 
			
		||||
 | 
			
		||||
SET(script_files go_mean mk_mean_script.sh mk_new_gnuplot.sh
 | 
			
		||||
    perlib_plot_settings.txt action_settings.txt gnuplot_common_settings.hh )
 | 
			
		||||
 | 
			
		||||
FOREACH(script_file ${script_files})
 | 
			
		||||
ADD_CUSTOM_COMMAND(
 | 
			
		||||
  TARGET copy_scripts
 | 
			
		||||
  POST_BUILD
 | 
			
		||||
  COMMAND ${CMAKE_COMMAND} -E copy ${CMAKE_CURRENT_SOURCE_DIR}/${script_file} ${CMAKE_CURRENT_BINARY_DIR}/
 | 
			
		||||
  ARGS
 | 
			
		||||
)
 | 
			
		||||
ENDFOREACH(script_file)
 | 
			
		||||
 | 
			
		||||
ADD_CUSTOM_COMMAND(
 | 
			
		||||
  TARGET copy_scripts
 | 
			
		||||
  POST_BUILD
 | 
			
		||||
  COMMAND ${CMAKE_CXX_COMPILER} --version | head -n 1 > ${CMAKE_CURRENT_BINARY_DIR}/compiler_version.txt
 | 
			
		||||
  ARGS
 | 
			
		||||
)
 | 
			
		||||
ADD_CUSTOM_COMMAND(
 | 
			
		||||
  TARGET copy_scripts
 | 
			
		||||
  POST_BUILD
 | 
			
		||||
  COMMAND echo "${Eigen_SOURCE_DIR}" > ${CMAKE_CURRENT_BINARY_DIR}/eigen_root_dir.txt
 | 
			
		||||
  ARGS
 | 
			
		||||
)
 | 
			
		||||
 | 
			
		||||
add_executable(smooth smooth.cxx)
 | 
			
		||||
add_executable(regularize regularize.cxx)
 | 
			
		||||
add_executable(main mean.cxx)
 | 
			
		||||
add_dependencies(main copy_scripts)
 | 
			
		||||
							
								
								
									
										19
									
								
								cs440-acg/ext/eigen/bench/btl/data/action_settings.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										19
									
								
								cs440-acg/ext/eigen/bench/btl/data/action_settings.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,19 @@
 | 
			
		||||
aat ; "{/*1.5 A x A^T}" ; "matrix size" ; 4:5000
 | 
			
		||||
ata ; "{/*1.5 A^T x A}" ; "matrix size" ; 4:5000
 | 
			
		||||
atv ; "{/*1.5 matrix^T x vector}" ; "matrix size" ; 4:5000
 | 
			
		||||
axpby ; "{/*1.5 Y = alpha X + beta Y}" ; "vector size" ; 5:1000000
 | 
			
		||||
axpy ; "{/*1.5 Y += alpha X}" ; "vector size" ; 5:1000000
 | 
			
		||||
matrix_matrix ; "{/*1.5 matrix matrix product}" ; "matrix size" ; 4:5000
 | 
			
		||||
matrix_vector ; "{/*1.5 matrix vector product}" ; "matrix size" ; 4:5000
 | 
			
		||||
trmm ; "{/*1.5 triangular matrix matrix product}" ; "matrix size" ; 4:5000
 | 
			
		||||
trisolve_vector ; "{/*1.5 triangular solver - vector (X = inv(L) X)}" ; "size" ; 4:5000
 | 
			
		||||
trisolve_matrix ; "{/*1.5 triangular solver - matrix (M = inv(L) M)}" ; "size" ; 4:5000
 | 
			
		||||
cholesky ; "{/*1.5 Cholesky decomposition}" ; "matrix size" ; 4:5000
 | 
			
		||||
complete_lu_decomp ; "{/*1.5 Complete LU decomposition}" ; "matrix size" ; 4:5000
 | 
			
		||||
partial_lu_decomp ; "{/*1.5 Partial LU decomposition}" ; "matrix size" ; 4:5000
 | 
			
		||||
tridiagonalization ; "{/*1.5 Tridiagonalization}" ; "matrix size" ; 4:5000
 | 
			
		||||
hessenberg ; "{/*1.5 Hessenberg decomposition}" ; "matrix size" ; 4:5000
 | 
			
		||||
symv ; "{/*1.5 symmetric matrix vector product}" ; "matrix size" ; 4:5000
 | 
			
		||||
syr2 ; "{/*1.5 symmretric rank-2 update (A += u^T v + u v^T)}" ; "matrix size" ; 4:5000
 | 
			
		||||
ger ; "{/*1.5 general rank-1 update (A += u v^T)}" ; "matrix size" ; 4:5000
 | 
			
		||||
rot ; "{/*1.5 apply rotation in the plane}" ; "vector size" ; 4:1000000
 | 
			
		||||
@@ -0,0 +1,87 @@
 | 
			
		||||
set noclip points
 | 
			
		||||
set clip one
 | 
			
		||||
set noclip two
 | 
			
		||||
set bar 1.000000
 | 
			
		||||
set border 31 lt -1 lw 1.000
 | 
			
		||||
set xdata
 | 
			
		||||
set ydata
 | 
			
		||||
set zdata
 | 
			
		||||
set x2data
 | 
			
		||||
set y2data
 | 
			
		||||
set boxwidth
 | 
			
		||||
set dummy x,y
 | 
			
		||||
set format x "%g"
 | 
			
		||||
set format y "%g"
 | 
			
		||||
set format x2 "%g"
 | 
			
		||||
set format y2 "%g"
 | 
			
		||||
set format z "%g"
 | 
			
		||||
set angles radians
 | 
			
		||||
set nogrid
 | 
			
		||||
set key title ""
 | 
			
		||||
set key left top Right noreverse box linetype -2 linewidth 1.000 samplen 4 spacing 1 width 0
 | 
			
		||||
set nolabel
 | 
			
		||||
set noarrow
 | 
			
		||||
# set nolinestyle # deprecated
 | 
			
		||||
set nologscale
 | 
			
		||||
set logscale x 10
 | 
			
		||||
set offsets 0, 0, 0, 0
 | 
			
		||||
set pointsize 1
 | 
			
		||||
set encoding default
 | 
			
		||||
set nopolar
 | 
			
		||||
set noparametric
 | 
			
		||||
set view 60, 30, 1, 1
 | 
			
		||||
set samples 100, 100
 | 
			
		||||
set isosamples 10, 10
 | 
			
		||||
set surface
 | 
			
		||||
set nocontour
 | 
			
		||||
set clabel '%8.3g'
 | 
			
		||||
set mapping cartesian
 | 
			
		||||
set nohidden3d
 | 
			
		||||
set cntrparam order 4
 | 
			
		||||
set cntrparam linear
 | 
			
		||||
set cntrparam levels auto 5
 | 
			
		||||
set cntrparam points 5
 | 
			
		||||
set size ratio 0 1,1
 | 
			
		||||
set origin 0,0
 | 
			
		||||
# set data style lines
 | 
			
		||||
# set function style lines
 | 
			
		||||
set xzeroaxis lt -2 lw 1.000
 | 
			
		||||
set x2zeroaxis lt -2 lw 1.000
 | 
			
		||||
set yzeroaxis lt -2 lw 1.000
 | 
			
		||||
set y2zeroaxis lt -2 lw 1.000
 | 
			
		||||
set tics in
 | 
			
		||||
set ticslevel 0.5
 | 
			
		||||
set tics scale 1, 0.5
 | 
			
		||||
set mxtics default
 | 
			
		||||
set mytics default
 | 
			
		||||
set mx2tics default
 | 
			
		||||
set my2tics default
 | 
			
		||||
set xtics border mirror norotate autofreq
 | 
			
		||||
set ytics border mirror norotate autofreq
 | 
			
		||||
set ztics border nomirror norotate autofreq
 | 
			
		||||
set nox2tics
 | 
			
		||||
set noy2tics
 | 
			
		||||
set timestamp "" bottom norotate offset 0,0
 | 
			
		||||
set rrange [ * : * ] noreverse nowriteback  # (currently [-0:10] )
 | 
			
		||||
set trange [ * : * ] noreverse nowriteback  # (currently [-5:5] )
 | 
			
		||||
set urange [ * : * ] noreverse nowriteback  # (currently [-5:5] )
 | 
			
		||||
set vrange [ * : * ] noreverse nowriteback  # (currently [-5:5] )
 | 
			
		||||
set xlabel "matrix size" offset 0,0
 | 
			
		||||
set x2label "" offset 0,0
 | 
			
		||||
set timefmt "%d/%m/%y\n%H:%M"
 | 
			
		||||
set xrange [ 10 : 1000 ] noreverse nowriteback
 | 
			
		||||
set x2range [ * : * ] noreverse nowriteback  # (currently [-10:10] )
 | 
			
		||||
set ylabel "MFLOPS" offset 0,0
 | 
			
		||||
set y2label "" offset 0,0
 | 
			
		||||
set yrange [ * : * ] noreverse nowriteback  # (currently [-10:10] )
 | 
			
		||||
set y2range [ * : * ] noreverse nowriteback  # (currently [-10:10] )
 | 
			
		||||
set zlabel "" offset 0,0
 | 
			
		||||
set zrange [ * : * ] noreverse nowriteback  # (currently [-10:10] )
 | 
			
		||||
set zero 1e-08
 | 
			
		||||
set lmargin -1
 | 
			
		||||
set bmargin -1
 | 
			
		||||
set rmargin -1
 | 
			
		||||
set tmargin -1
 | 
			
		||||
set locale "C"
 | 
			
		||||
set xrange [4:1024]
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										58
									
								
								cs440-acg/ext/eigen/bench/btl/data/go_mean
									
									
									
									
									
										Executable file
									
								
							
							
						
						
									
										58
									
								
								cs440-acg/ext/eigen/bench/btl/data/go_mean
									
									
									
									
									
										Executable file
									
								
							@@ -0,0 +1,58 @@
 | 
			
		||||
#!/bin/bash
 | 
			
		||||
 | 
			
		||||
if [ $# < 1 ]; then
 | 
			
		||||
  echo "Usage: $0 working_directory [tiny|large [prefix]]"
 | 
			
		||||
else
 | 
			
		||||
 | 
			
		||||
mkdir -p $1
 | 
			
		||||
##cp ../libs/*/*.dat $1
 | 
			
		||||
 | 
			
		||||
mode=large
 | 
			
		||||
if [ $# > 2 ]; then
 | 
			
		||||
  mode=$2
 | 
			
		||||
fi
 | 
			
		||||
if [ $# > 3 ]; then
 | 
			
		||||
  prefix=$3
 | 
			
		||||
fi
 | 
			
		||||
 | 
			
		||||
EIGENDIR=`cat eigen_root_dir.txt`
 | 
			
		||||
 | 
			
		||||
webpagefilename=$1/index.html
 | 
			
		||||
meanstatsfilename=$1/mean.html
 | 
			
		||||
 | 
			
		||||
echo ''  > $meanstatsfilename
 | 
			
		||||
echo ''  > $webpagefilename
 | 
			
		||||
echo '<p><strong>Configuration</strong>'  >> $webpagefilename
 | 
			
		||||
echo '<ul>'\
 | 
			
		||||
  '<li>' `cat /proc/cpuinfo | grep "model name" | head -n 1`\
 | 
			
		||||
  '  (' `uname -m` ')</li>'\
 | 
			
		||||
  '<li> compiler: ' `cat compiler_version.txt` '</li>'\
 | 
			
		||||
  '<li> eigen3: ' `hg identify -i $EIGENDIR` '</li>'\
 | 
			
		||||
  '</ul>' \
 | 
			
		||||
  '</p>'  >> $webpagefilename
 | 
			
		||||
 | 
			
		||||
source mk_mean_script.sh axpy $1 11 2500 100000 250000  $mode $prefix
 | 
			
		||||
source mk_mean_script.sh axpby $1 11 2500 100000 250000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh matrix_vector $1 11 50 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh atv $1 11 50 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh matrix_matrix $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh aat $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
# source mk_mean_script.sh ata $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh trmm $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh trisolve_vector $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh trisolve_matrix $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh cholesky $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh partial_lu_decomp $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh tridiagonalization $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh hessenberg $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh symv $1 11 50 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh syr2 $1 11 50 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh ger $1 11 50 300 1000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh rot $1 11 2500 100000 250000 $mode $prefix
 | 
			
		||||
source mk_mean_script.sh complete_lu_decomp $1 11 100 300 1000 $mode $prefix
 | 
			
		||||
 | 
			
		||||
fi
 | 
			
		||||
 | 
			
		||||
## compile the web page ##
 | 
			
		||||
 | 
			
		||||
#echo `cat footer.html` >> $webpagefilename
 | 
			
		||||
							
								
								
									
										182
									
								
								cs440-acg/ext/eigen/bench/btl/data/mean.cxx
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										182
									
								
								cs440-acg/ext/eigen/bench/btl/data/mean.cxx
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,182 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  mean.cxx
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:15 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include <string>
 | 
			
		||||
#include <iostream>
 | 
			
		||||
#include <fstream>
 | 
			
		||||
#include "bench_parameter.hh"
 | 
			
		||||
#include "utils/xy_file.hh"
 | 
			
		||||
#include <set>
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
double mean_calc(const vector<int> & tab_sizes, const vector<double> & tab_mflops, const int size_min, const int size_max);
 | 
			
		||||
 | 
			
		||||
class Lib_Mean{
 | 
			
		||||
 | 
			
		||||
public:
 | 
			
		||||
  Lib_Mean( void ):_lib_name(),_mean_in_cache(),_mean_out_of_cache(){
 | 
			
		||||
    MESSAGE("Lib_mean Default Ctor");
 | 
			
		||||
    MESSAGE("!!! should not be used");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
  Lib_Mean(const string & name, const double & mic, const double & moc):_lib_name(name),_mean_in_cache(mic),_mean_out_of_cache(moc){
 | 
			
		||||
    MESSAGE("Lib_mean Ctor");
 | 
			
		||||
  }
 | 
			
		||||
  Lib_Mean(const Lib_Mean & lm):_lib_name(lm._lib_name),_mean_in_cache(lm._mean_in_cache),_mean_out_of_cache(lm._mean_out_of_cache){
 | 
			
		||||
    MESSAGE("Lib_mean Copy Ctor");
 | 
			
		||||
  }
 | 
			
		||||
  ~Lib_Mean( void ){
 | 
			
		||||
    MESSAGE("Lib_mean Dtor");
 | 
			
		||||
  }
 | 
			
		||||
    
 | 
			
		||||
  double _mean_in_cache;
 | 
			
		||||
  double _mean_out_of_cache;
 | 
			
		||||
  string _lib_name;
 | 
			
		||||
 | 
			
		||||
  bool operator < ( const Lib_Mean &right) const 
 | 
			
		||||
  {
 | 
			
		||||
    //return ( this->_mean_out_of_cache > right._mean_out_of_cache) ;
 | 
			
		||||
    return ( this->_mean_in_cache > right._mean_in_cache) ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
}; 
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
int main( int argc , char *argv[] )
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  if (argc<6){
 | 
			
		||||
    INFOS("!!! Error ... usage : main what mic Mic moc Moc filename1 finename2...");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
  INFOS(argc);
 | 
			
		||||
 | 
			
		||||
  int min_in_cache=atoi(argv[2]);
 | 
			
		||||
  int max_in_cache=atoi(argv[3]);
 | 
			
		||||
  int min_out_of_cache=atoi(argv[4]);
 | 
			
		||||
  int max_out_of_cache=atoi(argv[5]);
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  multiset<Lib_Mean> s_lib_mean ;
 | 
			
		||||
 | 
			
		||||
  for (int i=6;i<argc;i++){
 | 
			
		||||
    
 | 
			
		||||
    string filename=argv[i];
 | 
			
		||||
    
 | 
			
		||||
    INFOS(filename);
 | 
			
		||||
 | 
			
		||||
    double mic=0;
 | 
			
		||||
    double moc=0;
 | 
			
		||||
 | 
			
		||||
    {
 | 
			
		||||
      
 | 
			
		||||
      vector<int> tab_sizes;
 | 
			
		||||
      vector<double> tab_mflops;
 | 
			
		||||
 | 
			
		||||
      read_xy_file(filename,tab_sizes,tab_mflops);
 | 
			
		||||
 | 
			
		||||
      mic=mean_calc(tab_sizes,tab_mflops,min_in_cache,max_in_cache);
 | 
			
		||||
      moc=mean_calc(tab_sizes,tab_mflops,min_out_of_cache,max_out_of_cache);
 | 
			
		||||
 | 
			
		||||
      Lib_Mean cur_lib_mean(filename,mic,moc);
 | 
			
		||||
      
 | 
			
		||||
      s_lib_mean.insert(cur_lib_mean);	
 | 
			
		||||
 | 
			
		||||
    }   
 | 
			
		||||
           
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  cout << "<TABLE BORDER CELLPADDING=2>" << endl ;
 | 
			
		||||
  cout << "  <TR>" << endl ;
 | 
			
		||||
  cout << "    <TH ALIGN=CENTER> " << argv[1] << " </TH>" << endl ;
 | 
			
		||||
  cout << "    <TH ALIGN=CENTER> <a href=""#mean_marker""> in cache <BR> mean perf <BR> Mflops </a></TH>" << endl ;
 | 
			
		||||
  cout << "    <TH ALIGN=CENTER> in cache <BR> % best </TH>" << endl ;
 | 
			
		||||
  cout << "    <TH ALIGN=CENTER> <a href=""#mean_marker""> out of cache <BR> mean perf <BR> Mflops </a></TH>" << endl ;
 | 
			
		||||
  cout << "    <TH ALIGN=CENTER> out of cache <BR> % best </TH>" << endl ;
 | 
			
		||||
  cout << "    <TH ALIGN=CENTER> details </TH>" << endl ;
 | 
			
		||||
  cout << "    <TH ALIGN=CENTER> comments </TH>" << endl ;
 | 
			
		||||
  cout << "  </TR>" << endl ;
 | 
			
		||||
 | 
			
		||||
  multiset<Lib_Mean>::iterator is = s_lib_mean.begin();
 | 
			
		||||
  Lib_Mean best(*is);  
 | 
			
		||||
  
 | 
			
		||||
 | 
			
		||||
  for (is=s_lib_mean.begin(); is!=s_lib_mean.end() ; is++){
 | 
			
		||||
 | 
			
		||||
    cout << "  <TR>" << endl ;
 | 
			
		||||
    cout << "     <TD> " << is->_lib_name << " </TD>" << endl ;
 | 
			
		||||
    cout << "     <TD> " << is->_mean_in_cache << " </TD>" << endl ;
 | 
			
		||||
    cout << "     <TD> " << 100*(is->_mean_in_cache/best._mean_in_cache) << " </TD>" << endl ;
 | 
			
		||||
    cout << "     <TD> " << is->_mean_out_of_cache << " </TD>" << endl ;
 | 
			
		||||
    cout << "     <TD> " << 100*(is->_mean_out_of_cache/best._mean_out_of_cache) << " </TD>" << endl ;
 | 
			
		||||
    cout << "     <TD> " << 
 | 
			
		||||
      "<a href=\"#"<<is->_lib_name<<"_"<<argv[1]<<"\">snippet</a>/" 
 | 
			
		||||
      "<a href=\"#"<<is->_lib_name<<"_flags\">flags</a>  </TD>" << endl ;
 | 
			
		||||
    cout << "     <TD> " << 
 | 
			
		||||
      "<a href=\"#"<<is->_lib_name<<"_comments\">click here</a>  </TD>" << endl ;
 | 
			
		||||
    cout << "  </TR>" << endl ;
 | 
			
		||||
  
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  cout << "</TABLE>" << endl ;
 | 
			
		||||
 | 
			
		||||
  ofstream output_file ("../order_lib",ios::out) ;
 | 
			
		||||
  
 | 
			
		||||
  for (is=s_lib_mean.begin(); is!=s_lib_mean.end() ; is++){
 | 
			
		||||
    output_file << is->_lib_name << endl ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  output_file.close();
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
double mean_calc(const vector<int> & tab_sizes, const vector<double> & tab_mflops, const int size_min, const int size_max){
 | 
			
		||||
  
 | 
			
		||||
  int size=tab_sizes.size();
 | 
			
		||||
  int nb_sample=0;
 | 
			
		||||
  double mean=0.0;
 | 
			
		||||
 | 
			
		||||
  for (int i=0;i<size;i++){
 | 
			
		||||
    
 | 
			
		||||
    
 | 
			
		||||
    if ((tab_sizes[i]>=size_min)&&(tab_sizes[i]<=size_max)){
 | 
			
		||||
      
 | 
			
		||||
      nb_sample++;
 | 
			
		||||
      mean+=tab_mflops[i];
 | 
			
		||||
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  if (nb_sample==0){
 | 
			
		||||
    INFOS("no data for mean calculation");
 | 
			
		||||
    return 0.0;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  return mean/nb_sample;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
  
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										68
									
								
								cs440-acg/ext/eigen/bench/btl/data/mk_gnuplot_script.sh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										68
									
								
								cs440-acg/ext/eigen/bench/btl/data/mk_gnuplot_script.sh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,68 @@
 | 
			
		||||
#! /bin/bash
 | 
			
		||||
WHAT=$1
 | 
			
		||||
DIR=$2
 | 
			
		||||
echo $WHAT script generation
 | 
			
		||||
cat $WHAT.hh > $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
DATA_FILE=`find $DIR -name "*.dat" | grep $WHAT`
 | 
			
		||||
 | 
			
		||||
echo plot \\ >> $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
for FILE in $DATA_FILE
 | 
			
		||||
do
 | 
			
		||||
    LAST=$FILE
 | 
			
		||||
done
 | 
			
		||||
 | 
			
		||||
echo LAST=$LAST
 | 
			
		||||
 | 
			
		||||
for FILE in $DATA_FILE
 | 
			
		||||
do
 | 
			
		||||
     if [ $FILE != $LAST ]
 | 
			
		||||
     then
 | 
			
		||||
	BASE=${FILE##*/} ; BASE=${FILE##*/} ; AVANT=bench_${WHAT}_ ; REDUC=${BASE##*$AVANT} ; TITLE=${REDUC%.dat}
 | 
			
		||||
	echo "'"$FILE"'" title "'"$TITLE"'" ",\\" >>  $WHAT.gnuplot
 | 
			
		||||
     fi
 | 
			
		||||
done
 | 
			
		||||
BASE=${LAST##*/} ; BASE=${FILE##*/} ; AVANT=bench_${WHAT}_ ; REDUC=${BASE##*$AVANT} ; TITLE=${REDUC%.dat}
 | 
			
		||||
echo "'"$LAST"'" title "'"$TITLE"'" >>  $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
#echo set term postscript color >> $WHAT.gnuplot
 | 
			
		||||
#echo set output "'"$WHAT.ps"'" >> $WHAT.gnuplot
 | 
			
		||||
echo set term pbm small color >> $WHAT.gnuplot
 | 
			
		||||
echo set output "'"$WHAT.ppm"'" >> $WHAT.gnuplot
 | 
			
		||||
echo plot \\ >> $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
for FILE in $DATA_FILE
 | 
			
		||||
do
 | 
			
		||||
     if [ $FILE != $LAST ]
 | 
			
		||||
     then
 | 
			
		||||
	BASE=${FILE##*/} ; BASE=${FILE##*/} ; AVANT=bench_${WHAT}_ ; REDUC=${BASE##*$AVANT} ; TITLE=${REDUC%.dat}
 | 
			
		||||
	echo "'"$FILE"'" title "'"$TITLE"'" ",\\" >>  $WHAT.gnuplot
 | 
			
		||||
     fi
 | 
			
		||||
done
 | 
			
		||||
BASE=${LAST##*/} ; BASE=${FILE##*/} ; AVANT=bench_${WHAT}_ ; REDUC=${BASE##*$AVANT} ; TITLE=${REDUC%.dat}
 | 
			
		||||
echo "'"$LAST"'" title "'"$TITLE"'" >>  $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
echo set term jpeg large >> $WHAT.gnuplot
 | 
			
		||||
echo set output "'"$WHAT.jpg"'" >> $WHAT.gnuplot
 | 
			
		||||
echo plot \\ >> $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
for FILE in $DATA_FILE
 | 
			
		||||
do
 | 
			
		||||
     if [ $FILE != $LAST ]
 | 
			
		||||
     then
 | 
			
		||||
	BASE=${FILE##*/} ; BASE=${FILE##*/} ; AVANT=bench_${WHAT}_ ; REDUC=${BASE##*$AVANT} ; TITLE=${REDUC%.dat}
 | 
			
		||||
	echo "'"$FILE"'" title "'"$TITLE"'" ",\\" >>  $WHAT.gnuplot
 | 
			
		||||
     fi
 | 
			
		||||
done
 | 
			
		||||
BASE=${LAST##*/} ; BASE=${FILE##*/} ; AVANT=bench_${WHAT}_ ; REDUC=${BASE##*$AVANT} ; TITLE=${REDUC%.dat}
 | 
			
		||||
echo "'"$LAST"'" title "'"$TITLE"'" >>  $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
gnuplot -persist < $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
rm $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										52
									
								
								cs440-acg/ext/eigen/bench/btl/data/mk_mean_script.sh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										52
									
								
								cs440-acg/ext/eigen/bench/btl/data/mk_mean_script.sh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,52 @@
 | 
			
		||||
#! /bin/bash
 | 
			
		||||
WHAT=$1
 | 
			
		||||
DIR=$2
 | 
			
		||||
MINIC=$3
 | 
			
		||||
MAXIC=$4
 | 
			
		||||
MINOC=$5
 | 
			
		||||
MAXOC=$6
 | 
			
		||||
prefix=$8
 | 
			
		||||
 | 
			
		||||
meanstatsfilename=$2/mean.html
 | 
			
		||||
 | 
			
		||||
WORK_DIR=tmp
 | 
			
		||||
mkdir $WORK_DIR
 | 
			
		||||
 | 
			
		||||
DATA_FILE=`find $DIR -name "*.dat" | grep _${WHAT}`
 | 
			
		||||
 | 
			
		||||
if [ -n "$DATA_FILE" ]; then
 | 
			
		||||
 | 
			
		||||
  echo ""
 | 
			
		||||
  echo "$1..."
 | 
			
		||||
  for FILE in $DATA_FILE
 | 
			
		||||
  do
 | 
			
		||||
          ##echo hello world
 | 
			
		||||
          ##echo "mk_mean_script1" ${FILE}
 | 
			
		||||
    BASE=${FILE##*/} ; BASE=${FILE##*/} ; AVANT=bench_${WHAT}_ ; REDUC=${BASE##*$AVANT} ; TITLE=${REDUC%.dat}
 | 
			
		||||
 | 
			
		||||
    ##echo "mk_mean_script1" ${TITLE}
 | 
			
		||||
    cp $FILE ${WORK_DIR}/${TITLE}
 | 
			
		||||
 | 
			
		||||
  done
 | 
			
		||||
 | 
			
		||||
  cd $WORK_DIR
 | 
			
		||||
  ../main $1 $3 $4 $5 $6 * >> ../$meanstatsfilename
 | 
			
		||||
  ../mk_new_gnuplot.sh $1 $2 $7
 | 
			
		||||
  rm -f *.gnuplot
 | 
			
		||||
  cd ..
 | 
			
		||||
 | 
			
		||||
  echo '<br/>' >> $meanstatsfilename
 | 
			
		||||
 | 
			
		||||
  webpagefilename=$2/index.html
 | 
			
		||||
  # echo '<h3>'${WHAT}'</h3>'  >> $webpagefilename
 | 
			
		||||
  echo '<hr/><a href="'$prefix$1'.pdf"><img src="'$prefix$1'.png" alt="'${WHAT}'" /></a><br/>'  >> $webpagefilename
 | 
			
		||||
 | 
			
		||||
fi
 | 
			
		||||
 | 
			
		||||
rm -R $WORK_DIR
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										54
									
								
								cs440-acg/ext/eigen/bench/btl/data/mk_new_gnuplot.sh
									
									
									
									
									
										Executable file
									
								
							
							
						
						
									
										54
									
								
								cs440-acg/ext/eigen/bench/btl/data/mk_new_gnuplot.sh
									
									
									
									
									
										Executable file
									
								
							@@ -0,0 +1,54 @@
 | 
			
		||||
#!/bin/bash
 | 
			
		||||
WHAT=$1
 | 
			
		||||
DIR=$2
 | 
			
		||||
 | 
			
		||||
cat ../gnuplot_common_settings.hh > ${WHAT}.gnuplot
 | 
			
		||||
 | 
			
		||||
echo "set title " `grep ${WHAT} ../action_settings.txt | head -n 1 | cut -d ";" -f 2` >> $WHAT.gnuplot
 | 
			
		||||
echo "set xlabel " `grep ${WHAT} ../action_settings.txt | head -n 1 | cut -d ";" -f 3` " offset 0,0" >> $WHAT.gnuplot
 | 
			
		||||
echo "set xrange [" `grep ${WHAT} ../action_settings.txt | head -n 1 | cut -d ";" -f 4` "]" >> $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
if [ $# > 3 ]; then
 | 
			
		||||
  if [ "$3" == "tiny" ]; then
 | 
			
		||||
    echo "set xrange [2:16]" >> $WHAT.gnuplot
 | 
			
		||||
    echo "set nologscale" >> $WHAT.gnuplot
 | 
			
		||||
  fi
 | 
			
		||||
fi
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
DATA_FILE=`cat ../order_lib`
 | 
			
		||||
echo set term postscript color rounded enhanced >> $WHAT.gnuplot
 | 
			
		||||
echo set output "'"../${DIR}/$WHAT.ps"'" >> $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
# echo set term svg color rounded enhanced >> $WHAT.gnuplot
 | 
			
		||||
# echo "set terminal svg enhanced size 1000 1000 fname \"Times\" fsize 36" >> $WHAT.gnuplot
 | 
			
		||||
# echo set output "'"../${DIR}/$WHAT.svg"'" >> $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
echo plot \\ >> $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
for FILE in $DATA_FILE
 | 
			
		||||
do
 | 
			
		||||
    LAST=$FILE
 | 
			
		||||
done
 | 
			
		||||
 | 
			
		||||
for FILE in $DATA_FILE
 | 
			
		||||
do
 | 
			
		||||
    BASE=${FILE##*/} ; BASE=${FILE##*/} ; AVANT=bench_${WHAT}_ ; REDUC=${BASE##*$AVANT} ; TITLE=${REDUC%.dat}
 | 
			
		||||
 | 
			
		||||
    echo "'"$FILE"'" `grep $TITLE ../perlib_plot_settings.txt | head -n 1 | cut -d ";" -f 2` "\\" >>  $WHAT.gnuplot
 | 
			
		||||
    if [ $FILE != $LAST ]
 | 
			
		||||
    then
 | 
			
		||||
      echo ", \\" >>  $WHAT.gnuplot
 | 
			
		||||
    fi
 | 
			
		||||
done
 | 
			
		||||
echo " " >>  $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
gnuplot -persist < $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
rm $WHAT.gnuplot
 | 
			
		||||
 | 
			
		||||
ps2pdf ../${DIR}/$WHAT.ps ../${DIR}/$WHAT.pdf
 | 
			
		||||
convert -background white -density 120 -rotate 90 -resize 800 +dither -colors 256 -quality 0 ../${DIR}/$WHAT.ps -background white -flatten  ../${DIR}/$WHAT.png
 | 
			
		||||
 | 
			
		||||
# pstoedit -rotate -90 -xscale 0.8 -yscale 0.8 -centered -yshift -50 -xshift -100  -f plot-svg aat.ps  aat2.svg
 | 
			
		||||
							
								
								
									
										16
									
								
								cs440-acg/ext/eigen/bench/btl/data/perlib_plot_settings.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										16
									
								
								cs440-acg/ext/eigen/bench/btl/data/perlib_plot_settings.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,16 @@
 | 
			
		||||
eigen3 ;          with lines lw 4 lt 1 lc rgbcolor "black"
 | 
			
		||||
eigen2 ;          with lines lw 3 lt 1 lc rgbcolor "#999999"
 | 
			
		||||
EigenBLAS ;       with lines lw 3 lt 3 lc rgbcolor "#999999"
 | 
			
		||||
eigen3_novec ;    with lines lw 2 lt 1 lc rgbcolor "#999999"
 | 
			
		||||
eigen3_nogccvec ; with lines lw 2 lt 2 lc rgbcolor "#991010"
 | 
			
		||||
INTEL_MKL ;       with lines lw 3 lt 1 lc rgbcolor "#ff0000"
 | 
			
		||||
ATLAS ;           with lines lw 3 lt 1 lc rgbcolor "#008000"
 | 
			
		||||
gmm ;             with lines lw 3 lt 1 lc rgbcolor "#0000ff"
 | 
			
		||||
ublas ;           with lines lw 3 lt 1 lc rgbcolor "#00b7ff"
 | 
			
		||||
mtl4 ;            with lines lw 3 lt 1 lc rgbcolor "#d18847"
 | 
			
		||||
blitz ;           with lines lw 3 lt 1 lc rgbcolor "#ff00ff"
 | 
			
		||||
F77 ;             with lines lw 3 lt 3 lc rgbcolor "#e6e64c"
 | 
			
		||||
OPENBLAS ;        with lines lw 3 lt 1 lc rgbcolor "#C05600"
 | 
			
		||||
C ;               with lines lw 3 lt 3 lc rgbcolor "#e6bd96"
 | 
			
		||||
ACML ;            with lines lw 2 lt 3 lc rgbcolor "#e6e64c"
 | 
			
		||||
blaze ;           with lines lw 3 lt 1 lc rgbcolor "#ff00ff"
 | 
			
		||||
							
								
								
									
										131
									
								
								cs440-acg/ext/eigen/bench/btl/data/regularize.cxx
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										131
									
								
								cs440-acg/ext/eigen/bench/btl/data/regularize.cxx
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,131 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  regularize.cxx
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:15 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include <string>
 | 
			
		||||
#include <iostream>
 | 
			
		||||
#include <fstream>
 | 
			
		||||
#include "bench_parameter.hh"
 | 
			
		||||
#include <set>
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
void read_xy_file(const string & filename, vector<int> & tab_sizes, vector<double> & tab_mflops);
 | 
			
		||||
void regularize_curve(const string & filename,
 | 
			
		||||
		      const vector<double> & tab_mflops, 
 | 
			
		||||
		      const vector<int> & tab_sizes, 
 | 
			
		||||
		      int start_cut_size, int stop_cut_size);
 | 
			
		||||
/////////////////////////////////////////////////////////////////////////////////////////////////
 | 
			
		||||
 | 
			
		||||
int main( int argc , char *argv[] )
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  // input data
 | 
			
		||||
 | 
			
		||||
  if (argc<4){
 | 
			
		||||
    INFOS("!!! Error ... usage : main filename start_cut_size stop_cut_size regularize_filename");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
  INFOS(argc);
 | 
			
		||||
 | 
			
		||||
  int start_cut_size=atoi(argv[2]);
 | 
			
		||||
  int stop_cut_size=atoi(argv[3]);
 | 
			
		||||
 | 
			
		||||
  string filename=argv[1];
 | 
			
		||||
  string regularize_filename=argv[4];
 | 
			
		||||
  
 | 
			
		||||
  INFOS(filename);
 | 
			
		||||
  INFOS("start_cut_size="<<start_cut_size);
 | 
			
		||||
 | 
			
		||||
  vector<int> tab_sizes;
 | 
			
		||||
  vector<double> tab_mflops;
 | 
			
		||||
 | 
			
		||||
  read_xy_file(filename,tab_sizes,tab_mflops);
 | 
			
		||||
 | 
			
		||||
  // regularizeing
 | 
			
		||||
 | 
			
		||||
  regularize_curve(regularize_filename,tab_mflops,tab_sizes,start_cut_size,stop_cut_size);
 | 
			
		||||
  
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
//////////////////////////////////////////////////////////////////////////////////////
 | 
			
		||||
 | 
			
		||||
void regularize_curve(const string & filename,
 | 
			
		||||
		      const vector<double> & tab_mflops, 
 | 
			
		||||
		      const vector<int> & tab_sizes, 
 | 
			
		||||
		      int start_cut_size, int stop_cut_size)
 | 
			
		||||
{
 | 
			
		||||
  int size=tab_mflops.size();
 | 
			
		||||
  ofstream output_file (filename.c_str(),ios::out) ;
 | 
			
		||||
 | 
			
		||||
  int i=0;
 | 
			
		||||
 | 
			
		||||
  while(tab_sizes[i]<start_cut_size){
 | 
			
		||||
    
 | 
			
		||||
    output_file << tab_sizes[i] << " " <<  tab_mflops[i] << endl ;
 | 
			
		||||
    i++;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
    
 | 
			
		||||
  output_file << endl ;
 | 
			
		||||
 | 
			
		||||
  while(tab_sizes[i]<stop_cut_size){
 | 
			
		||||
    
 | 
			
		||||
    i++;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  while(i<size){
 | 
			
		||||
    
 | 
			
		||||
    output_file << tab_sizes[i] << " " <<  tab_mflops[i] << endl ;
 | 
			
		||||
    i++;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  output_file.close();
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////
 | 
			
		||||
 | 
			
		||||
void read_xy_file(const string & filename, vector<int> & tab_sizes, vector<double> & tab_mflops){
 | 
			
		||||
 | 
			
		||||
  ifstream input_file (filename.c_str(),ios::in) ;
 | 
			
		||||
 | 
			
		||||
  if (!input_file){
 | 
			
		||||
    INFOS("!!! Error opening "<<filename);
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
  int nb_point=0;
 | 
			
		||||
  int size=0;
 | 
			
		||||
  double mflops=0;
 | 
			
		||||
 | 
			
		||||
  while (input_file >> size >> mflops ){
 | 
			
		||||
    nb_point++;
 | 
			
		||||
    tab_sizes.push_back(size);
 | 
			
		||||
    tab_mflops.push_back(mflops);
 | 
			
		||||
  }
 | 
			
		||||
  SCRUTE(nb_point);
 | 
			
		||||
 | 
			
		||||
  input_file.close();
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										198
									
								
								cs440-acg/ext/eigen/bench/btl/data/smooth.cxx
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										198
									
								
								cs440-acg/ext/eigen/bench/btl/data/smooth.cxx
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,198 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  smooth.cxx
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:15 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include <deque>
 | 
			
		||||
#include <string>
 | 
			
		||||
#include <iostream>
 | 
			
		||||
#include <fstream>
 | 
			
		||||
#include "bench_parameter.hh"
 | 
			
		||||
#include <set>
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
void read_xy_file(const string & filename, vector<int> & tab_sizes, vector<double> & tab_mflops);
 | 
			
		||||
void write_xy_file(const string & filename, vector<int> & tab_sizes, vector<double> & tab_mflops);
 | 
			
		||||
void smooth_curve(const vector<double> & tab_mflops, vector<double> & smooth_tab_mflops,int window_half_width);
 | 
			
		||||
void centered_smooth_curve(const vector<double> & tab_mflops, vector<double> & smooth_tab_mflops,int window_half_width);
 | 
			
		||||
 | 
			
		||||
/////////////////////////////////////////////////////////////////////////////////////////////////
 | 
			
		||||
 | 
			
		||||
int main( int argc , char *argv[] )
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  // input data
 | 
			
		||||
 | 
			
		||||
  if (argc<3){
 | 
			
		||||
    INFOS("!!! Error ... usage : main filename window_half_width smooth_filename");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
  INFOS(argc);
 | 
			
		||||
 | 
			
		||||
  int window_half_width=atoi(argv[2]);
 | 
			
		||||
 | 
			
		||||
  string filename=argv[1];
 | 
			
		||||
  string smooth_filename=argv[3];
 | 
			
		||||
  
 | 
			
		||||
  INFOS(filename);
 | 
			
		||||
  INFOS("window_half_width="<<window_half_width);
 | 
			
		||||
 | 
			
		||||
  vector<int> tab_sizes;
 | 
			
		||||
  vector<double> tab_mflops;
 | 
			
		||||
 | 
			
		||||
  read_xy_file(filename,tab_sizes,tab_mflops);
 | 
			
		||||
 | 
			
		||||
  // smoothing
 | 
			
		||||
 | 
			
		||||
  vector<double> smooth_tab_mflops;
 | 
			
		||||
 | 
			
		||||
  //smooth_curve(tab_mflops,smooth_tab_mflops,window_half_width);
 | 
			
		||||
  centered_smooth_curve(tab_mflops,smooth_tab_mflops,window_half_width);
 | 
			
		||||
 | 
			
		||||
  // output result
 | 
			
		||||
 | 
			
		||||
  write_xy_file(smooth_filename,tab_sizes,smooth_tab_mflops);
 | 
			
		||||
  
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////
 | 
			
		||||
 | 
			
		||||
template<class VECTOR>
 | 
			
		||||
double weighted_mean(const VECTOR & data)
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  double mean=0.0;
 | 
			
		||||
  
 | 
			
		||||
  for (int i=0 ; i<data.size() ; i++){
 | 
			
		||||
 | 
			
		||||
    mean+=data[i];
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  return mean/double(data.size()) ;
 | 
			
		||||
 | 
			
		||||
}    
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
void smooth_curve(const vector<double> & tab_mflops, vector<double> & smooth_tab_mflops,int window_half_width){
 | 
			
		||||
  
 | 
			
		||||
  int window_width=2*window_half_width+1;
 | 
			
		||||
 | 
			
		||||
  int size=tab_mflops.size();
 | 
			
		||||
 | 
			
		||||
  vector<double> sample(window_width);
 | 
			
		||||
  
 | 
			
		||||
  for (int i=0 ; i < size ; i++){
 | 
			
		||||
    
 | 
			
		||||
    for ( int j=0 ; j < window_width ; j++ ){
 | 
			
		||||
      
 | 
			
		||||
      int shifted_index=i+j-window_half_width;
 | 
			
		||||
      if (shifted_index<0) shifted_index=0;
 | 
			
		||||
      if (shifted_index>size-1) shifted_index=size-1;
 | 
			
		||||
      sample[j]=tab_mflops[shifted_index];
 | 
			
		||||
      
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    smooth_tab_mflops.push_back(weighted_mean(sample));
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
void centered_smooth_curve(const vector<double> & tab_mflops, vector<double> & smooth_tab_mflops,int window_half_width){
 | 
			
		||||
  
 | 
			
		||||
  int max_window_width=2*window_half_width+1;
 | 
			
		||||
 | 
			
		||||
  int size=tab_mflops.size();
 | 
			
		||||
 | 
			
		||||
  
 | 
			
		||||
  for (int i=0 ; i < size ; i++){
 | 
			
		||||
 | 
			
		||||
    deque<double> sample;
 | 
			
		||||
 | 
			
		||||
    
 | 
			
		||||
    sample.push_back(tab_mflops[i]);
 | 
			
		||||
 | 
			
		||||
    for ( int j=1 ; j <= window_half_width ; j++ ){
 | 
			
		||||
      
 | 
			
		||||
      int before=i-j;
 | 
			
		||||
      int after=i+j;
 | 
			
		||||
      
 | 
			
		||||
      if ((before>=0)&&(after<size)) // inside of the vector
 | 
			
		||||
	{ 
 | 
			
		||||
	  sample.push_front(tab_mflops[before]);
 | 
			
		||||
	  sample.push_back(tab_mflops[after]);
 | 
			
		||||
	}
 | 
			
		||||
    }
 | 
			
		||||
    
 | 
			
		||||
    smooth_tab_mflops.push_back(weighted_mean(sample));
 | 
			
		||||
    
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////
 | 
			
		||||
 | 
			
		||||
void write_xy_file(const string & filename, vector<int> & tab_sizes, vector<double> & tab_mflops){
 | 
			
		||||
 | 
			
		||||
  ofstream output_file (filename.c_str(),ios::out) ;
 | 
			
		||||
  
 | 
			
		||||
  for (int i=0 ; i < tab_sizes.size() ; i++)
 | 
			
		||||
    {
 | 
			
		||||
      output_file << tab_sizes[i] << " " <<  tab_mflops[i] << endl ;
 | 
			
		||||
    }
 | 
			
		||||
  
 | 
			
		||||
  output_file.close();
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
///////////////////////////////////////////////////////////////////////////////////////////////////////////////////
 | 
			
		||||
 | 
			
		||||
void read_xy_file(const string & filename, vector<int> & tab_sizes, vector<double> & tab_mflops){
 | 
			
		||||
 | 
			
		||||
  ifstream input_file (filename.c_str(),ios::in) ;
 | 
			
		||||
 | 
			
		||||
  if (!input_file){
 | 
			
		||||
    INFOS("!!! Error opening "<<filename);
 | 
			
		||||
    exit(0);
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
  int nb_point=0;
 | 
			
		||||
  int size=0;
 | 
			
		||||
  double mflops=0;
 | 
			
		||||
 | 
			
		||||
  while (input_file >> size >> mflops ){
 | 
			
		||||
    nb_point++;
 | 
			
		||||
    tab_sizes.push_back(size);
 | 
			
		||||
    tab_mflops.push_back(mflops);
 | 
			
		||||
  }
 | 
			
		||||
  SCRUTE(nb_point);
 | 
			
		||||
 | 
			
		||||
  input_file.close();
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										68
									
								
								cs440-acg/ext/eigen/bench/btl/data/smooth_all.sh
									
									
									
									
									
										Executable file
									
								
							
							
						
						
									
										68
									
								
								cs440-acg/ext/eigen/bench/btl/data/smooth_all.sh
									
									
									
									
									
										Executable file
									
								
							@@ -0,0 +1,68 @@
 | 
			
		||||
#! /bin/bash
 | 
			
		||||
ORIG_DIR=$1
 | 
			
		||||
SMOOTH_DIR=${ORIG_DIR}_smooth
 | 
			
		||||
mkdir ${SMOOTH_DIR}
 | 
			
		||||
 | 
			
		||||
AXPY_FILE=`find ${ORIG_DIR} -name "*.dat" | grep axpy`
 | 
			
		||||
for FILE in ${AXPY_FILE}
 | 
			
		||||
do
 | 
			
		||||
    echo $FILE
 | 
			
		||||
    BASE=${FILE##*/}
 | 
			
		||||
    ./smooth ${ORIG_DIR}/${BASE} 4 ${SMOOTH_DIR}/${BASE}_tmp
 | 
			
		||||
    ./regularize ${SMOOTH_DIR}/${BASE}_tmp 2500 15000 ${SMOOTH_DIR}/${BASE}
 | 
			
		||||
    rm -f  ${SMOOTH_DIR}/${BASE}_tmp
 | 
			
		||||
done
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
MATRIX_VECTOR_FILE=`find ${ORIG_DIR} -name "*.dat" | grep matrix_vector`
 | 
			
		||||
for FILE in ${MATRIX_VECTOR_FILE}
 | 
			
		||||
do
 | 
			
		||||
    echo $FILE
 | 
			
		||||
    BASE=${FILE##*/}
 | 
			
		||||
    ./smooth ${ORIG_DIR}/${BASE} 4 ${SMOOTH_DIR}/${BASE}_tmp
 | 
			
		||||
    ./regularize ${SMOOTH_DIR}/${BASE}_tmp 50 180 ${SMOOTH_DIR}/${BASE}
 | 
			
		||||
    rm -f  ${SMOOTH_DIR}/${BASE}_tmp
 | 
			
		||||
done
 | 
			
		||||
 | 
			
		||||
MATRIX_MATRIX_FILE=`find ${ORIG_DIR} -name "*.dat" | grep matrix_matrix`
 | 
			
		||||
for FILE in ${MATRIX_MATRIX_FILE}
 | 
			
		||||
do
 | 
			
		||||
    echo $FILE
 | 
			
		||||
    BASE=${FILE##*/}
 | 
			
		||||
    ./smooth ${ORIG_DIR}/${BASE} 4 ${SMOOTH_DIR}/${BASE}
 | 
			
		||||
done
 | 
			
		||||
 | 
			
		||||
AAT_FILE=`find ${ORIG_DIR} -name "*.dat" | grep _aat`
 | 
			
		||||
for FILE in ${AAT_FILE}
 | 
			
		||||
do
 | 
			
		||||
    echo $FILE
 | 
			
		||||
    BASE=${FILE##*/}
 | 
			
		||||
    ./smooth ${ORIG_DIR}/${BASE} 4 ${SMOOTH_DIR}/${BASE}
 | 
			
		||||
done
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
ATA_FILE=`find ${ORIG_DIR} -name "*.dat" | grep _ata`
 | 
			
		||||
for FILE in ${ATA_FILE}
 | 
			
		||||
do
 | 
			
		||||
    echo $FILE
 | 
			
		||||
    BASE=${FILE##*/}
 | 
			
		||||
    ./smooth ${ORIG_DIR}/${BASE} 4 ${SMOOTH_DIR}/${BASE}
 | 
			
		||||
done
 | 
			
		||||
 | 
			
		||||
### no smoothing for tinyvector and matrices libs
 | 
			
		||||
 | 
			
		||||
TINY_BLITZ_FILE=`find ${ORIG_DIR} -name "*.dat" | grep tiny_blitz`
 | 
			
		||||
for FILE in ${TINY_BLITZ_FILE}
 | 
			
		||||
do
 | 
			
		||||
    echo $FILE
 | 
			
		||||
    BASE=${FILE##*/}
 | 
			
		||||
    cp ${ORIG_DIR}/${BASE} ${SMOOTH_DIR}/${BASE}
 | 
			
		||||
done
 | 
			
		||||
 | 
			
		||||
TVMET_FILE=`find ${ORIG_DIR} -name "*.dat" | grep tvmet`
 | 
			
		||||
for FILE in ${TVMET_FILE}
 | 
			
		||||
do
 | 
			
		||||
    echo $FILE
 | 
			
		||||
    BASE=${FILE##*/}
 | 
			
		||||
    cp ${ORIG_DIR}/${BASE} ${SMOOTH_DIR}/${BASE}
 | 
			
		||||
done
 | 
			
		||||
							
								
								
									
										168
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/bench.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										168
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/bench.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,168 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  bench.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:16 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef BENCH_HH
 | 
			
		||||
#define BENCH_HH
 | 
			
		||||
 | 
			
		||||
#include "btl.hh"
 | 
			
		||||
#include "bench_parameter.hh"
 | 
			
		||||
#include <iostream>
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "size_lin_log.hh"
 | 
			
		||||
#include "xy_file.hh"
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "timers/portable_perf_analyzer.hh"
 | 
			
		||||
// #include "timers/mixed_perf_analyzer.hh"
 | 
			
		||||
// #include "timers/x86_perf_analyzer.hh"
 | 
			
		||||
// #include "timers/STL_perf_analyzer.hh"
 | 
			
		||||
#ifdef HAVE_MKL
 | 
			
		||||
extern "C" void cblas_saxpy(const int, const float, const float*, const int, float *, const int);
 | 
			
		||||
#endif
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template <template<class> class Perf_Analyzer, class Action>
 | 
			
		||||
BTL_DONT_INLINE void bench( int size_min, int size_max, int nb_point )
 | 
			
		||||
{
 | 
			
		||||
  if (BtlConfig::skipAction(Action::name()))
 | 
			
		||||
    return;
 | 
			
		||||
 | 
			
		||||
  string filename="bench_"+Action::name()+".dat";
 | 
			
		||||
 | 
			
		||||
  INFOS("starting " <<filename);
 | 
			
		||||
 | 
			
		||||
  // utilities
 | 
			
		||||
 | 
			
		||||
  std::vector<double> tab_mflops(nb_point);
 | 
			
		||||
  std::vector<int> tab_sizes(nb_point);
 | 
			
		||||
 | 
			
		||||
  // matrices and vector size calculations
 | 
			
		||||
  size_lin_log(nb_point,size_min,size_max,tab_sizes);
 | 
			
		||||
 | 
			
		||||
  std::vector<int> oldSizes;
 | 
			
		||||
  std::vector<double> oldFlops;
 | 
			
		||||
  bool hasOldResults = read_xy_file(filename, oldSizes, oldFlops, true);
 | 
			
		||||
  int oldi = oldSizes.size() - 1;
 | 
			
		||||
 | 
			
		||||
  // loop on matrix size
 | 
			
		||||
  Perf_Analyzer<Action> perf_action;
 | 
			
		||||
  for (int i=nb_point-1;i>=0;i--)
 | 
			
		||||
  {
 | 
			
		||||
    //INFOS("size=" <<tab_sizes[i]<<"   ("<<nb_point-i<<"/"<<nb_point<<")");
 | 
			
		||||
    std::cout << " " << "size = " << tab_sizes[i] << "  " << std::flush;
 | 
			
		||||
 | 
			
		||||
    BTL_DISABLE_SSE_EXCEPTIONS();
 | 
			
		||||
    #ifdef HAVE_MKL
 | 
			
		||||
    {
 | 
			
		||||
      float dummy;
 | 
			
		||||
      cblas_saxpy(1,0,&dummy,1,&dummy,1);
 | 
			
		||||
    }
 | 
			
		||||
    #endif
 | 
			
		||||
 | 
			
		||||
    tab_mflops[i] = perf_action.eval_mflops(tab_sizes[i]);
 | 
			
		||||
    std::cout << tab_mflops[i];
 | 
			
		||||
    
 | 
			
		||||
    if (hasOldResults)
 | 
			
		||||
    {
 | 
			
		||||
      while (oldi>=0 && oldSizes[oldi]>tab_sizes[i])
 | 
			
		||||
        --oldi;
 | 
			
		||||
      if (oldi>=0 && oldSizes[oldi]==tab_sizes[i])
 | 
			
		||||
      {
 | 
			
		||||
        if (oldFlops[oldi]<tab_mflops[i])
 | 
			
		||||
          std::cout << "\t > ";
 | 
			
		||||
        else
 | 
			
		||||
          std::cout << "\t < ";
 | 
			
		||||
        std::cout << oldFlops[oldi];
 | 
			
		||||
      }
 | 
			
		||||
      --oldi;
 | 
			
		||||
    }
 | 
			
		||||
    std::cout << " MFlops    (" << nb_point-i << "/" << nb_point << ")" << std::endl;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  if (!BtlConfig::Instance.overwriteResults)
 | 
			
		||||
  {
 | 
			
		||||
    if (hasOldResults)
 | 
			
		||||
    {
 | 
			
		||||
      // merge the two data
 | 
			
		||||
      std::vector<int> newSizes;
 | 
			
		||||
      std::vector<double> newFlops;
 | 
			
		||||
      unsigned int i=0;
 | 
			
		||||
      unsigned int j=0;
 | 
			
		||||
      while (i<tab_sizes.size() && j<oldSizes.size())
 | 
			
		||||
      {
 | 
			
		||||
        if (tab_sizes[i] == oldSizes[j])
 | 
			
		||||
        {
 | 
			
		||||
          newSizes.push_back(tab_sizes[i]);
 | 
			
		||||
          newFlops.push_back(std::max(tab_mflops[i], oldFlops[j]));
 | 
			
		||||
          ++i;
 | 
			
		||||
          ++j;
 | 
			
		||||
        }
 | 
			
		||||
        else if (tab_sizes[i] < oldSizes[j])
 | 
			
		||||
        {
 | 
			
		||||
          newSizes.push_back(tab_sizes[i]);
 | 
			
		||||
          newFlops.push_back(tab_mflops[i]);
 | 
			
		||||
          ++i;
 | 
			
		||||
        }
 | 
			
		||||
        else
 | 
			
		||||
        {
 | 
			
		||||
          newSizes.push_back(oldSizes[j]);
 | 
			
		||||
          newFlops.push_back(oldFlops[j]);
 | 
			
		||||
          ++j;
 | 
			
		||||
        }
 | 
			
		||||
      }
 | 
			
		||||
      while (i<tab_sizes.size())
 | 
			
		||||
      {
 | 
			
		||||
        newSizes.push_back(tab_sizes[i]);
 | 
			
		||||
        newFlops.push_back(tab_mflops[i]);
 | 
			
		||||
        ++i;
 | 
			
		||||
      }
 | 
			
		||||
      while (j<oldSizes.size())
 | 
			
		||||
      {
 | 
			
		||||
        newSizes.push_back(oldSizes[j]);
 | 
			
		||||
        newFlops.push_back(oldFlops[j]);
 | 
			
		||||
        ++j;
 | 
			
		||||
      }
 | 
			
		||||
      tab_mflops = newFlops;
 | 
			
		||||
      tab_sizes = newSizes;
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  // dump the result in a file  :
 | 
			
		||||
  dump_xy_file(tab_sizes,tab_mflops,filename);
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
// default Perf Analyzer
 | 
			
		||||
 | 
			
		||||
template <class Action>
 | 
			
		||||
BTL_DONT_INLINE void bench( int size_min, int size_max, int nb_point ){
 | 
			
		||||
 | 
			
		||||
  // if the rdtsc is not available :
 | 
			
		||||
  bench<Portable_Perf_Analyzer,Action>(size_min,size_max,nb_point);
 | 
			
		||||
  // if the rdtsc is available :
 | 
			
		||||
//    bench<Mixed_Perf_Analyzer,Action>(size_min,size_max,nb_point);
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  // Only for small problem size. Otherwize it will be too long
 | 
			
		||||
//   bench<X86_Perf_Analyzer,Action>(size_min,size_max,nb_point);
 | 
			
		||||
//   bench<STL_Perf_Analyzer,Action>(size_min,size_max,nb_point);
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
@@ -0,0 +1,53 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  bench_parameter.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:16 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef BENCH_PARAMETER_HH
 | 
			
		||||
#define BENCH_PARAMETER_HH
 | 
			
		||||
 | 
			
		||||
// minimal time for each measurement
 | 
			
		||||
#define REAL_TYPE float
 | 
			
		||||
// minimal time for each measurement
 | 
			
		||||
#define MIN_TIME 0.2
 | 
			
		||||
// nb of point on bench curves
 | 
			
		||||
#define NB_POINT 100
 | 
			
		||||
// min vector size for axpy bench
 | 
			
		||||
#define MIN_AXPY 5
 | 
			
		||||
// max vector size for axpy bench
 | 
			
		||||
#define MAX_AXPY 3000000
 | 
			
		||||
// min matrix size for matrix vector product bench
 | 
			
		||||
#define MIN_MV 5
 | 
			
		||||
// max matrix size for matrix vector product bench
 | 
			
		||||
#define MAX_MV 5000
 | 
			
		||||
// min matrix size for matrix matrix product bench
 | 
			
		||||
#define MIN_MM 5
 | 
			
		||||
// max matrix size for matrix matrix product bench
 | 
			
		||||
#define MAX_MM MAX_MV
 | 
			
		||||
// min matrix size for LU bench
 | 
			
		||||
#define MIN_LU 5
 | 
			
		||||
// max matrix size for LU bench
 | 
			
		||||
#define MAX_LU 3000
 | 
			
		||||
// max size for tiny vector and matrix
 | 
			
		||||
#define TINY_MV_MAX_SIZE 16
 | 
			
		||||
// default nb_sample for x86 timer
 | 
			
		||||
#define DEFAULT_NB_SAMPLE 1000
 | 
			
		||||
 | 
			
		||||
// how many times we run a single bench (keep the best perf)
 | 
			
		||||
#define DEFAULT_NB_TRIES 3
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										242
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/btl.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										242
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/btl.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,242 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  btl.hh
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef BTL_HH
 | 
			
		||||
#define BTL_HH
 | 
			
		||||
 | 
			
		||||
#include "bench_parameter.hh"
 | 
			
		||||
#include <iostream>
 | 
			
		||||
#include <algorithm>
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include <string>
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
 | 
			
		||||
#if (defined __GNUC__)
 | 
			
		||||
#define BTL_ALWAYS_INLINE __attribute__((always_inline)) inline
 | 
			
		||||
#else
 | 
			
		||||
#define BTL_ALWAYS_INLINE inline
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
#if (defined __GNUC__)
 | 
			
		||||
#define BTL_DONT_INLINE __attribute__((noinline))
 | 
			
		||||
#else
 | 
			
		||||
#define BTL_DONT_INLINE
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
#if (defined __GNUC__)
 | 
			
		||||
#define BTL_ASM_COMMENT(X)  asm("#" X)
 | 
			
		||||
#else
 | 
			
		||||
#define BTL_ASM_COMMENT(X)
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
#ifdef __SSE__
 | 
			
		||||
#include "xmmintrin.h"
 | 
			
		||||
// This enables flush to zero (FTZ) and denormals are zero (DAZ) modes:
 | 
			
		||||
#define BTL_DISABLE_SSE_EXCEPTIONS()  { _mm_setcsr(_mm_getcsr() | 0x8040); }
 | 
			
		||||
#else
 | 
			
		||||
#define BTL_DISABLE_SSE_EXCEPTIONS()
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
/** Enhanced std::string
 | 
			
		||||
*/
 | 
			
		||||
class BtlString : public std::string
 | 
			
		||||
{
 | 
			
		||||
public:
 | 
			
		||||
    BtlString() : std::string() {}
 | 
			
		||||
    BtlString(const BtlString& str) : std::string(static_cast<const std::string&>(str)) {}
 | 
			
		||||
    BtlString(const std::string& str) : std::string(str) {}
 | 
			
		||||
    BtlString(const char* str) : std::string(str) {}
 | 
			
		||||
 | 
			
		||||
    operator const char* () const { return c_str(); }
 | 
			
		||||
 | 
			
		||||
    void trim( bool left = true, bool right = true )
 | 
			
		||||
    {
 | 
			
		||||
        int lspaces, rspaces, len = length(), i;
 | 
			
		||||
        lspaces = rspaces = 0;
 | 
			
		||||
 | 
			
		||||
        if ( left )
 | 
			
		||||
            for (i=0; i<len && (at(i)==' '||at(i)=='\t'||at(i)=='\r'||at(i)=='\n'); ++lspaces,++i);
 | 
			
		||||
 | 
			
		||||
        if ( right && lspaces < len )
 | 
			
		||||
            for(i=len-1; i>=0 && (at(i)==' '||at(i)=='\t'||at(i)=='\r'||at(i)=='\n'); rspaces++,i--);
 | 
			
		||||
 | 
			
		||||
        *this = substr(lspaces, len-lspaces-rspaces);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    std::vector<BtlString> split( const BtlString& delims = "\t\n ") const
 | 
			
		||||
    {
 | 
			
		||||
        std::vector<BtlString> ret;
 | 
			
		||||
        unsigned int numSplits = 0;
 | 
			
		||||
        size_t start, pos;
 | 
			
		||||
        start = 0;
 | 
			
		||||
        do
 | 
			
		||||
        {
 | 
			
		||||
            pos = find_first_of(delims, start);
 | 
			
		||||
            if (pos == start)
 | 
			
		||||
            {
 | 
			
		||||
                ret.push_back("");
 | 
			
		||||
                start = pos + 1;
 | 
			
		||||
            }
 | 
			
		||||
            else if (pos == npos)
 | 
			
		||||
                ret.push_back( substr(start) );
 | 
			
		||||
            else
 | 
			
		||||
            {
 | 
			
		||||
                ret.push_back( substr(start, pos - start) );
 | 
			
		||||
                start = pos + 1;
 | 
			
		||||
            }
 | 
			
		||||
            //start = find_first_not_of(delims, start);
 | 
			
		||||
            ++numSplits;
 | 
			
		||||
        } while (pos != npos);
 | 
			
		||||
        return ret;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    bool endsWith(const BtlString& str) const
 | 
			
		||||
    {
 | 
			
		||||
        if(str.size()>this->size())
 | 
			
		||||
            return false;
 | 
			
		||||
        return this->substr(this->size()-str.size(),str.size()) == str;
 | 
			
		||||
    }
 | 
			
		||||
    bool contains(const BtlString& str) const
 | 
			
		||||
    {
 | 
			
		||||
        return this->find(str)<this->size();
 | 
			
		||||
    }
 | 
			
		||||
    bool beginsWith(const BtlString& str) const
 | 
			
		||||
    {
 | 
			
		||||
        if(str.size()>this->size())
 | 
			
		||||
            return false;
 | 
			
		||||
        return this->substr(0,str.size()) == str;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    BtlString toLowerCase( void )
 | 
			
		||||
    {
 | 
			
		||||
        std::transform(begin(), end(), begin(), static_cast<int(*)(int)>(::tolower) );
 | 
			
		||||
        return *this;
 | 
			
		||||
    }
 | 
			
		||||
    BtlString toUpperCase( void )
 | 
			
		||||
    {
 | 
			
		||||
        std::transform(begin(), end(), begin(), static_cast<int(*)(int)>(::toupper) );
 | 
			
		||||
        return *this;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    /** Case insensitive comparison.
 | 
			
		||||
    */
 | 
			
		||||
    bool isEquiv(const BtlString& str) const
 | 
			
		||||
    {
 | 
			
		||||
        BtlString str0 = *this;
 | 
			
		||||
        str0.toLowerCase();
 | 
			
		||||
        BtlString str1 = str;
 | 
			
		||||
        str1.toLowerCase();
 | 
			
		||||
        return str0 == str1;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    /** Decompose the current string as a path and a file.
 | 
			
		||||
        For instance: "dir1/dir2/file.ext" leads to path="dir1/dir2/" and filename="file.ext"
 | 
			
		||||
    */
 | 
			
		||||
    void decomposePathAndFile(BtlString& path, BtlString& filename) const
 | 
			
		||||
    {
 | 
			
		||||
        std::vector<BtlString> elements = this->split("/\\");
 | 
			
		||||
        path = "";
 | 
			
		||||
        filename = elements.back();
 | 
			
		||||
        elements.pop_back();
 | 
			
		||||
        if (this->at(0)=='/')
 | 
			
		||||
            path = "/";
 | 
			
		||||
        for (unsigned int i=0 ; i<elements.size() ; ++i)
 | 
			
		||||
            path += elements[i] + "/";
 | 
			
		||||
    }
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
class BtlConfig
 | 
			
		||||
{
 | 
			
		||||
public:
 | 
			
		||||
  BtlConfig()
 | 
			
		||||
    : overwriteResults(false), checkResults(true), realclock(false), tries(DEFAULT_NB_TRIES)
 | 
			
		||||
  {
 | 
			
		||||
    char * _config;
 | 
			
		||||
    _config = getenv ("BTL_CONFIG");
 | 
			
		||||
    if (_config!=NULL)
 | 
			
		||||
    {
 | 
			
		||||
      std::vector<BtlString> config = BtlString(_config).split(" \t\n");
 | 
			
		||||
      for (unsigned int i = 0; i<config.size(); i++)
 | 
			
		||||
      {
 | 
			
		||||
        if (config[i].beginsWith("-a"))
 | 
			
		||||
        {
 | 
			
		||||
          if (i+1==config.size())
 | 
			
		||||
          {
 | 
			
		||||
            std::cerr << "error processing option: " << config[i] << "\n";
 | 
			
		||||
            exit(2);
 | 
			
		||||
          }
 | 
			
		||||
          Instance.m_selectedActionNames = config[i+1].split(":");
 | 
			
		||||
 | 
			
		||||
          i += 1;
 | 
			
		||||
        }
 | 
			
		||||
        else if (config[i].beginsWith("-t"))
 | 
			
		||||
        {
 | 
			
		||||
          if (i+1==config.size())
 | 
			
		||||
          {
 | 
			
		||||
            std::cerr << "error processing option: " << config[i] << "\n";
 | 
			
		||||
            exit(2);
 | 
			
		||||
          }
 | 
			
		||||
          Instance.tries = atoi(config[i+1].c_str());
 | 
			
		||||
 | 
			
		||||
          i += 1;
 | 
			
		||||
        }
 | 
			
		||||
        else if (config[i].beginsWith("--overwrite"))
 | 
			
		||||
        {
 | 
			
		||||
          Instance.overwriteResults = true;
 | 
			
		||||
        }
 | 
			
		||||
        else if (config[i].beginsWith("--nocheck"))
 | 
			
		||||
        {
 | 
			
		||||
          Instance.checkResults = false;
 | 
			
		||||
        }
 | 
			
		||||
        else if (config[i].beginsWith("--real"))
 | 
			
		||||
        {
 | 
			
		||||
          Instance.realclock = true;
 | 
			
		||||
        }
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    BTL_DISABLE_SSE_EXCEPTIONS();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE static bool skipAction(const std::string& _name)
 | 
			
		||||
  {
 | 
			
		||||
    if (Instance.m_selectedActionNames.empty())
 | 
			
		||||
      return false;
 | 
			
		||||
 | 
			
		||||
    BtlString name(_name);
 | 
			
		||||
    for (unsigned int i=0; i<Instance.m_selectedActionNames.size(); ++i)
 | 
			
		||||
      if (name.contains(Instance.m_selectedActionNames[i]))
 | 
			
		||||
        return false;
 | 
			
		||||
 | 
			
		||||
    return true;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static BtlConfig Instance;
 | 
			
		||||
  bool overwriteResults;
 | 
			
		||||
  bool checkResults;
 | 
			
		||||
  bool realclock;
 | 
			
		||||
  int tries;
 | 
			
		||||
 | 
			
		||||
protected:
 | 
			
		||||
  std::vector<BtlString> m_selectedActionNames;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#define BTL_MAIN \
 | 
			
		||||
  BtlConfig BtlConfig::Instance
 | 
			
		||||
 | 
			
		||||
#endif // BTL_HH
 | 
			
		||||
@@ -0,0 +1,54 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  init_function.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:18 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef INIT_FUNCTION_HH
 | 
			
		||||
#define INIT_FUNCTION_HH
 | 
			
		||||
 | 
			
		||||
double simple_function(int index)
 | 
			
		||||
{
 | 
			
		||||
  return index;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
double simple_function(int index_i, int index_j)
 | 
			
		||||
{
 | 
			
		||||
  return index_i+index_j;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
double pseudo_random(int /*index*/)
 | 
			
		||||
{
 | 
			
		||||
  return std::rand()/double(RAND_MAX);
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
double pseudo_random(int /*index_i*/, int /*index_j*/)
 | 
			
		||||
{
 | 
			
		||||
  return std::rand()/double(RAND_MAX);
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
double null_function(int /*index*/)
 | 
			
		||||
{
 | 
			
		||||
  return 0.0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
double null_function(int /*index_i*/, int /*index_j*/)
 | 
			
		||||
{
 | 
			
		||||
  return 0.0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
@@ -0,0 +1,64 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  init_matrix.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:19 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef INIT_MATRIX_HH
 | 
			
		||||
#define INIT_MATRIX_HH
 | 
			
		||||
 | 
			
		||||
// The Vector class must satisfy the following part of STL vector concept :
 | 
			
		||||
//            resize() method
 | 
			
		||||
//            [] operator for setting element
 | 
			
		||||
//            value_type defined
 | 
			
		||||
template<double init_function(int,int), class Vector>
 | 
			
		||||
BTL_DONT_INLINE void init_row(Vector & X, int size, int row){
 | 
			
		||||
 | 
			
		||||
  X.resize(size);
 | 
			
		||||
 | 
			
		||||
  for (unsigned int j=0;j<X.size();j++){
 | 
			
		||||
    X[j]=typename Vector::value_type(init_function(row,j));
 | 
			
		||||
  }
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
// Matrix is a Vector of Vector
 | 
			
		||||
// The Matrix class must satisfy the following part of STL vector concept :
 | 
			
		||||
//            resize() method
 | 
			
		||||
//            [] operator for setting rows
 | 
			
		||||
template<double init_function(int,int),class Vector>
 | 
			
		||||
BTL_DONT_INLINE void init_matrix(Vector &  A, int size){
 | 
			
		||||
  A.resize(size);
 | 
			
		||||
  for (unsigned int row=0; row<A.size() ; row++){
 | 
			
		||||
    init_row<init_function>(A[row],size,row);
 | 
			
		||||
  }
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
template<double init_function(int,int),class Matrix>
 | 
			
		||||
BTL_DONT_INLINE void init_matrix_symm(Matrix&  A, int size){
 | 
			
		||||
  A.resize(size);
 | 
			
		||||
  for (unsigned int row=0; row<A.size() ; row++)
 | 
			
		||||
    A[row].resize(size);
 | 
			
		||||
  for (unsigned int row=0; row<A.size() ; row++){
 | 
			
		||||
    A[row][row] = init_function(row,row);
 | 
			
		||||
    for (unsigned int col=0; col<row ; col++){
 | 
			
		||||
      double x = init_function(row,col);
 | 
			
		||||
      A[row][col] = A[col][row] = x;
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
@@ -0,0 +1,37 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  init_vector.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:18 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef INIT_VECTOR_HH
 | 
			
		||||
#define INIT_VECTOR_HH
 | 
			
		||||
 | 
			
		||||
// The Vector class must satisfy the following part of STL vector concept :
 | 
			
		||||
//            resize() method
 | 
			
		||||
//            [] operator for setting element
 | 
			
		||||
//            value_type defined
 | 
			
		||||
template<double init_function(int), class Vector>
 | 
			
		||||
void init_vector(Vector & X, int size){
 | 
			
		||||
 | 
			
		||||
  X.resize(size);
 | 
			
		||||
 | 
			
		||||
  for (unsigned int i=0;i<X.size();i++){
 | 
			
		||||
    X[i]=typename Vector::value_type(init_function(i));
 | 
			
		||||
  }
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
@@ -0,0 +1,80 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  bench_static.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:16 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef BENCH_STATIC_HH
 | 
			
		||||
#define BENCH_STATIC_HH
 | 
			
		||||
 | 
			
		||||
#include "btl.hh"
 | 
			
		||||
#include "bench_parameter.hh"
 | 
			
		||||
#include <iostream>
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "xy_file.hh"
 | 
			
		||||
#include "static/static_size_generator.hh"
 | 
			
		||||
#include "timers/portable_perf_analyzer.hh"
 | 
			
		||||
// #include "timers/mixed_perf_analyzer.hh"
 | 
			
		||||
// #include "timers/x86_perf_analyzer.hh"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
template <template<class> class Perf_Analyzer, template<class> class Action, template<class,int> class Interface>
 | 
			
		||||
BTL_DONT_INLINE  void bench_static(void)
 | 
			
		||||
{
 | 
			
		||||
  if (BtlConfig::skipAction(Action<Interface<REAL_TYPE,10> >::name()))
 | 
			
		||||
    return;
 | 
			
		||||
 | 
			
		||||
  string filename = "bench_" + Action<Interface<REAL_TYPE,10> >::name() + ".dat";
 | 
			
		||||
 | 
			
		||||
  INFOS("starting " << filename);
 | 
			
		||||
 | 
			
		||||
  const int max_size = TINY_MV_MAX_SIZE;
 | 
			
		||||
 | 
			
		||||
  std::vector<double> tab_mflops;
 | 
			
		||||
  std::vector<double> tab_sizes;
 | 
			
		||||
 | 
			
		||||
  static_size_generator<max_size,Perf_Analyzer,Action,Interface>::go(tab_sizes,tab_mflops);
 | 
			
		||||
 | 
			
		||||
  dump_xy_file(tab_sizes,tab_mflops,filename);
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
// default Perf Analyzer
 | 
			
		||||
template <template<class> class Action, template<class,int> class Interface>
 | 
			
		||||
BTL_DONT_INLINE  void bench_static(void)
 | 
			
		||||
{
 | 
			
		||||
  bench_static<Portable_Perf_Analyzer,Action,Interface>();
 | 
			
		||||
  //bench_static<Mixed_Perf_Analyzer,Action,Interface>();
 | 
			
		||||
  //bench_static<X86_Perf_Analyzer,Action,Interface>();
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
@@ -0,0 +1,66 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  intel_bench_fixed_size.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:37 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef _BENCH_FIXED_SIZE_HH_
 | 
			
		||||
#define _BENCH_FIXED_SIZE_HH_
 | 
			
		||||
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "function_time.hh"
 | 
			
		||||
 | 
			
		||||
template <class Action>
 | 
			
		||||
double bench_fixed_size(int size, unsigned long long  & nb_calc,unsigned long long & nb_init)
 | 
			
		||||
{
 | 
			
		||||
  
 | 
			
		||||
  Action action(size);
 | 
			
		||||
  
 | 
			
		||||
  double time_baseline=time_init(nb_init,action);
 | 
			
		||||
 | 
			
		||||
  while (time_baseline < MIN_TIME) {
 | 
			
		||||
 | 
			
		||||
    //INFOS("nb_init="<<nb_init);
 | 
			
		||||
    //INFOS("time_baseline="<<time_baseline);
 | 
			
		||||
    nb_init*=2;
 | 
			
		||||
    time_baseline=time_init(nb_init,action);
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
  time_baseline=time_baseline/(double(nb_init));
 | 
			
		||||
  
 | 
			
		||||
  double time_action=time_calculate(nb_calc,action);
 | 
			
		||||
  
 | 
			
		||||
  while (time_action < MIN_TIME) {
 | 
			
		||||
    
 | 
			
		||||
    nb_calc*=2;
 | 
			
		||||
    time_action=time_calculate(nb_calc,action);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  INFOS("nb_init="<<nb_init);
 | 
			
		||||
  INFOS("nb_calc="<<nb_calc);
 | 
			
		||||
  
 | 
			
		||||
  
 | 
			
		||||
  time_action=time_action/(double(nb_calc));
 | 
			
		||||
  
 | 
			
		||||
  action.check_result();
 | 
			
		||||
  
 | 
			
		||||
  time_action=time_action-time_baseline;
 | 
			
		||||
 | 
			
		||||
  return action.nb_op_base()/(time_action*1000000.0);
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
@@ -0,0 +1,57 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  static_size_generator.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:36 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef _STATIC_SIZE_GENERATOR_HH
 | 
			
		||||
#define _STATIC_SIZE_GENERATOR_HH
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
//recursive generation of statically defined matrix and vector sizes
 | 
			
		||||
 | 
			
		||||
template <int SIZE,template<class> class Perf_Analyzer, template<class> class Action, template<class,int> class Interface> 
 | 
			
		||||
struct static_size_generator{
 | 
			
		||||
  static void go(vector<double> & tab_sizes, vector<double> & tab_mflops)
 | 
			
		||||
  {
 | 
			
		||||
    tab_sizes.push_back(SIZE);
 | 
			
		||||
    std::cout << tab_sizes.back() << " \t" << std::flush;
 | 
			
		||||
    Perf_Analyzer<Action<Interface<REAL_TYPE,SIZE> > > perf_action;
 | 
			
		||||
    tab_mflops.push_back(perf_action.eval_mflops(SIZE));
 | 
			
		||||
    std::cout << tab_mflops.back() << " MFlops" << std::endl;
 | 
			
		||||
    static_size_generator<SIZE-1,Perf_Analyzer,Action,Interface>::go(tab_sizes,tab_mflops);
 | 
			
		||||
  };
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
//recursion end
 | 
			
		||||
 | 
			
		||||
template <template<class> class Perf_Analyzer, template<class> class Action, template<class,int> class Interface> 
 | 
			
		||||
struct static_size_generator<1,Perf_Analyzer,Action,Interface>{  
 | 
			
		||||
  static  void go(vector<double> & tab_sizes, vector<double> & tab_mflops)
 | 
			
		||||
  {
 | 
			
		||||
    tab_sizes.push_back(1);
 | 
			
		||||
    Perf_Analyzer<Action<Interface<REAL_TYPE,1> > > perf_action;
 | 
			
		||||
    tab_mflops.push_back(perf_action.eval_mflops(1));
 | 
			
		||||
  };
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
  
 | 
			
		||||
  
 | 
			
		||||
  
 | 
			
		||||
  
 | 
			
		||||
@@ -0,0 +1,82 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  STL_perf_analyzer.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:35 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef _STL_PERF_ANALYSER_HH
 | 
			
		||||
#define _STL_PERF_ANALYSER_HH
 | 
			
		||||
 | 
			
		||||
#include "STL_timer.hh"
 | 
			
		||||
#include "bench_parameter.hh"
 | 
			
		||||
 | 
			
		||||
template<class ACTION>
 | 
			
		||||
class STL_Perf_Analyzer{
 | 
			
		||||
public:  
 | 
			
		||||
  STL_Perf_Analyzer(unsigned long long nb_sample=DEFAULT_NB_SAMPLE):_nb_sample(nb_sample),_chronos()
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("STL_Perf_Analyzer Ctor");
 | 
			
		||||
  }; 
 | 
			
		||||
  STL_Perf_Analyzer( const STL_Perf_Analyzer & ){
 | 
			
		||||
    INFOS("Copy Ctor not implemented");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  };
 | 
			
		||||
  ~STL_Perf_Analyzer( void ){
 | 
			
		||||
    MESSAGE("STL_Perf_Analyzer Dtor");
 | 
			
		||||
  };
 | 
			
		||||
  
 | 
			
		||||
  
 | 
			
		||||
  inline double eval_mflops(int size)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    ACTION action(size);
 | 
			
		||||
 | 
			
		||||
    _chronos.start_baseline(_nb_sample);
 | 
			
		||||
      
 | 
			
		||||
    do {
 | 
			
		||||
 | 
			
		||||
      action.initialize();
 | 
			
		||||
    } while (_chronos.check());
 | 
			
		||||
 | 
			
		||||
    double baseline_time=_chronos.get_time();
 | 
			
		||||
 | 
			
		||||
    _chronos.start(_nb_sample);
 | 
			
		||||
    do {
 | 
			
		||||
      action.initialize();
 | 
			
		||||
      action.calculate();
 | 
			
		||||
    } while (_chronos.check());
 | 
			
		||||
 | 
			
		||||
    double calculate_time=_chronos.get_time();
 | 
			
		||||
 | 
			
		||||
    double corrected_time=calculate_time-baseline_time;
 | 
			
		||||
    
 | 
			
		||||
    //    cout << size <<" "<<baseline_time<<" "<<calculate_time<<" "<<corrected_time<<" "<<action.nb_op_base() << endl;    
 | 
			
		||||
    
 | 
			
		||||
    return action.nb_op_base()/(corrected_time*1000000.0);
 | 
			
		||||
    //return action.nb_op_base()/(calculate_time*1000000.0);
 | 
			
		||||
    
 | 
			
		||||
  }
 | 
			
		||||
private:
 | 
			
		||||
 | 
			
		||||
  STL_Timer _chronos;
 | 
			
		||||
  unsigned long long _nb_sample;
 | 
			
		||||
 | 
			
		||||
  
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
  
 | 
			
		||||
  
 | 
			
		||||
#endif
 | 
			
		||||
@@ -0,0 +1,78 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  STL_Timer.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:35 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
// STL Timer Class. Adapted (L.P.) from the timer class by Musser et Al
 | 
			
		||||
// described int the Book : STL Tutorial and reference guide.
 | 
			
		||||
// Define a timer class for analyzing algorithm performance.
 | 
			
		||||
#include <iostream>
 | 
			
		||||
#include <iomanip>
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include <map>
 | 
			
		||||
#include <algorithm>
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
class STL_Timer {
 | 
			
		||||
public:
 | 
			
		||||
  STL_Timer(){ baseline = false; };  // Default constructor
 | 
			
		||||
  // Start a series of r trials:
 | 
			
		||||
  void start(unsigned int r){
 | 
			
		||||
    reps = r;
 | 
			
		||||
    count = 0;
 | 
			
		||||
    iterations.clear();
 | 
			
		||||
    iterations.reserve(reps);
 | 
			
		||||
    initial = time(0);
 | 
			
		||||
  };
 | 
			
		||||
  // Start a series of r trials to determine baseline time:
 | 
			
		||||
  void start_baseline(unsigned int r)
 | 
			
		||||
  {
 | 
			
		||||
    baseline = true;
 | 
			
		||||
    start(r);
 | 
			
		||||
  }
 | 
			
		||||
  // Returns true if the trials have been completed, else false
 | 
			
		||||
  bool check()
 | 
			
		||||
  {
 | 
			
		||||
    ++count;
 | 
			
		||||
    final = time(0);
 | 
			
		||||
    if (initial < final) {
 | 
			
		||||
      iterations.push_back(count);  
 | 
			
		||||
      initial = final;
 | 
			
		||||
      count = 0;
 | 
			
		||||
    }
 | 
			
		||||
    return (iterations.size() < reps);
 | 
			
		||||
  };
 | 
			
		||||
  // Returns the results for external use
 | 
			
		||||
  double get_time( void )
 | 
			
		||||
  {
 | 
			
		||||
    sort(iterations.begin(), iterations.end());
 | 
			
		||||
    return 1.0/iterations[reps/2];
 | 
			
		||||
  };
 | 
			
		||||
private:
 | 
			
		||||
  unsigned int reps;  // Number of trials
 | 
			
		||||
  // For storing loop iterations of a trial
 | 
			
		||||
  vector<long> iterations;
 | 
			
		||||
  // For saving initial and final times of a trial
 | 
			
		||||
  time_t initial, final;
 | 
			
		||||
  // For counting loop iterations of a trial
 | 
			
		||||
  unsigned long count;
 | 
			
		||||
  // true if this is a baseline computation, false otherwise
 | 
			
		||||
  bool baseline;
 | 
			
		||||
  // For recording the baseline time 
 | 
			
		||||
  double baseline_time;
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
@@ -0,0 +1,73 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  mixed_perf_analyzer.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:36 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef _MIXED_PERF_ANALYSER_HH
 | 
			
		||||
#define _MIXED_PERF_ANALYSER_HH
 | 
			
		||||
 | 
			
		||||
#include "x86_perf_analyzer.hh"
 | 
			
		||||
#include "portable_perf_analyzer.hh"
 | 
			
		||||
 | 
			
		||||
// choose portable perf analyzer for long calculations and x86 analyser for short ones
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
template<class Action>
 | 
			
		||||
class Mixed_Perf_Analyzer{
 | 
			
		||||
  
 | 
			
		||||
public:  
 | 
			
		||||
  Mixed_Perf_Analyzer( void ):_x86pa(),_ppa(),_use_ppa(true)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("Mixed_Perf_Analyzer Ctor");
 | 
			
		||||
  }; 
 | 
			
		||||
  Mixed_Perf_Analyzer( const Mixed_Perf_Analyzer & ){
 | 
			
		||||
    INFOS("Copy Ctor not implemented");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  };
 | 
			
		||||
  ~Mixed_Perf_Analyzer( void ){
 | 
			
		||||
    MESSAGE("Mixed_Perf_Analyzer Dtor");
 | 
			
		||||
  };
 | 
			
		||||
    
 | 
			
		||||
  
 | 
			
		||||
  inline double eval_mflops(int size)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    double result=0.0;
 | 
			
		||||
    if (_use_ppa){      
 | 
			
		||||
      result=_ppa.eval_mflops(size);
 | 
			
		||||
      if (_ppa.get_nb_calc()>DEFAULT_NB_SAMPLE){_use_ppa=false;}      
 | 
			
		||||
    }
 | 
			
		||||
    else{      
 | 
			
		||||
      result=_x86pa.eval_mflops(size);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    return result;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private:
 | 
			
		||||
 | 
			
		||||
  Portable_Perf_Analyzer<Action> _ppa;
 | 
			
		||||
  X86_Perf_Analyzer<Action> _x86pa;
 | 
			
		||||
  bool _use_ppa;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
  
 | 
			
		||||
    
 | 
			
		||||
  
 | 
			
		||||
@@ -0,0 +1,103 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  portable_perf_analyzer.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:35 CET 2002
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef _PORTABLE_PERF_ANALYZER_HH
 | 
			
		||||
#define _PORTABLE_PERF_ANALYZER_HH
 | 
			
		||||
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "timers/portable_timer.hh"
 | 
			
		||||
 | 
			
		||||
template <class Action>
 | 
			
		||||
class Portable_Perf_Analyzer{
 | 
			
		||||
public:
 | 
			
		||||
  Portable_Perf_Analyzer( ):_nb_calc(0), m_time_action(0), _chronos(){
 | 
			
		||||
    MESSAGE("Portable_Perf_Analyzer Ctor");
 | 
			
		||||
  };
 | 
			
		||||
  Portable_Perf_Analyzer( const Portable_Perf_Analyzer & ){
 | 
			
		||||
    INFOS("Copy Ctor not implemented");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  };
 | 
			
		||||
  ~Portable_Perf_Analyzer(){
 | 
			
		||||
    MESSAGE("Portable_Perf_Analyzer Dtor");
 | 
			
		||||
  };
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE double eval_mflops(int size)
 | 
			
		||||
  {
 | 
			
		||||
    Action action(size);
 | 
			
		||||
 | 
			
		||||
//     action.initialize();
 | 
			
		||||
//     time_action = time_calculate(action);
 | 
			
		||||
    while (m_time_action < MIN_TIME)
 | 
			
		||||
    {
 | 
			
		||||
      if(_nb_calc==0) _nb_calc = 1;
 | 
			
		||||
      else            _nb_calc *= 2;
 | 
			
		||||
      action.initialize();
 | 
			
		||||
      m_time_action = time_calculate(action);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // optimize
 | 
			
		||||
    for (int i=1; i<BtlConfig::Instance.tries; ++i)
 | 
			
		||||
    {
 | 
			
		||||
      Action _action(size);
 | 
			
		||||
      std::cout << " " << _action.nb_op_base()*_nb_calc/(m_time_action*1e6) << " ";
 | 
			
		||||
      _action.initialize();
 | 
			
		||||
      m_time_action = std::min(m_time_action, time_calculate(_action));
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    double time_action = m_time_action / (double(_nb_calc));
 | 
			
		||||
 | 
			
		||||
    // check
 | 
			
		||||
    if (BtlConfig::Instance.checkResults && size<128)
 | 
			
		||||
    {
 | 
			
		||||
      action.initialize();
 | 
			
		||||
      action.calculate();
 | 
			
		||||
      action.check_result();
 | 
			
		||||
    }
 | 
			
		||||
    return action.nb_op_base()/(time_action*1e6);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  BTL_DONT_INLINE double time_calculate(Action & action)
 | 
			
		||||
  {
 | 
			
		||||
    // time measurement
 | 
			
		||||
    action.calculate();
 | 
			
		||||
    _chronos.start();
 | 
			
		||||
    for (unsigned int ii=0;ii<_nb_calc;ii++)
 | 
			
		||||
    {
 | 
			
		||||
      action.calculate();
 | 
			
		||||
    }
 | 
			
		||||
    _chronos.stop();
 | 
			
		||||
    return _chronos.user_time();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  unsigned long long get_nb_calc()
 | 
			
		||||
  {
 | 
			
		||||
    return _nb_calc;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
private:
 | 
			
		||||
  unsigned long long _nb_calc;
 | 
			
		||||
  double m_time_action;
 | 
			
		||||
  Portable_Timer _chronos;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif //_PORTABLE_PERF_ANALYZER_HH
 | 
			
		||||
 | 
			
		||||
@@ -0,0 +1,134 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  portable_perf_analyzer.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:35 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef _PORTABLE_PERF_ANALYZER_HH
 | 
			
		||||
#define _PORTABLE_PERF_ANALYZER_HH
 | 
			
		||||
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "timers/portable_timer.hh"
 | 
			
		||||
 | 
			
		||||
template <class Action>
 | 
			
		||||
class Portable_Perf_Analyzer{
 | 
			
		||||
public:
 | 
			
		||||
  Portable_Perf_Analyzer( void ):_nb_calc(1),_nb_init(1),_chronos(){
 | 
			
		||||
    MESSAGE("Portable_Perf_Analyzer Ctor");
 | 
			
		||||
  };
 | 
			
		||||
  Portable_Perf_Analyzer( const Portable_Perf_Analyzer & ){
 | 
			
		||||
    INFOS("Copy Ctor not implemented");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  };
 | 
			
		||||
  ~Portable_Perf_Analyzer( void ){
 | 
			
		||||
    MESSAGE("Portable_Perf_Analyzer Dtor");
 | 
			
		||||
  };
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  inline double eval_mflops(int size)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    Action action(size);
 | 
			
		||||
 | 
			
		||||
//     double time_baseline = time_init(action);
 | 
			
		||||
//     while (time_baseline < MIN_TIME_INIT)
 | 
			
		||||
//     {
 | 
			
		||||
//       _nb_init *= 2;
 | 
			
		||||
//       time_baseline = time_init(action);
 | 
			
		||||
//     }
 | 
			
		||||
//
 | 
			
		||||
//     // optimize
 | 
			
		||||
//     for (int i=1; i<NB_TRIES; ++i)
 | 
			
		||||
//       time_baseline = std::min(time_baseline, time_init(action));
 | 
			
		||||
//
 | 
			
		||||
//     time_baseline = time_baseline/(double(_nb_init));
 | 
			
		||||
 | 
			
		||||
    double time_action = time_calculate(action);
 | 
			
		||||
    while (time_action < MIN_TIME)
 | 
			
		||||
    {
 | 
			
		||||
      _nb_calc *= 2;
 | 
			
		||||
      time_action = time_calculate(action);
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    // optimize
 | 
			
		||||
    for (int i=1; i<NB_TRIES; ++i)
 | 
			
		||||
      time_action = std::min(time_action, time_calculate(action));
 | 
			
		||||
 | 
			
		||||
//     INFOS("size="<<size);
 | 
			
		||||
//     INFOS("_nb_init="<<_nb_init);
 | 
			
		||||
//     INFOS("_nb_calc="<<_nb_calc);
 | 
			
		||||
 | 
			
		||||
    time_action = time_action / (double(_nb_calc));
 | 
			
		||||
 | 
			
		||||
    action.check_result();
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
    double time_baseline = time_init(action);
 | 
			
		||||
    for (int i=1; i<NB_TRIES; ++i)
 | 
			
		||||
      time_baseline = std::min(time_baseline, time_init(action));
 | 
			
		||||
    time_baseline = time_baseline/(double(_nb_init));
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
//     INFOS("time_baseline="<<time_baseline);
 | 
			
		||||
//     INFOS("time_action="<<time_action);
 | 
			
		||||
 | 
			
		||||
    time_action = time_action - time_baseline;
 | 
			
		||||
 | 
			
		||||
//     INFOS("time_corrected="<<time_action);
 | 
			
		||||
 | 
			
		||||
    return action.nb_op_base()/(time_action*1000000.0);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline double time_init(Action & action)
 | 
			
		||||
  {
 | 
			
		||||
    // time measurement
 | 
			
		||||
    _chronos.start();
 | 
			
		||||
    for (int ii=0; ii<_nb_init; ii++)
 | 
			
		||||
      action.initialize();
 | 
			
		||||
    _chronos.stop();
 | 
			
		||||
    return _chronos.user_time();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  inline double time_calculate(Action & action)
 | 
			
		||||
  {
 | 
			
		||||
    // time measurement
 | 
			
		||||
    _chronos.start();
 | 
			
		||||
    for (int ii=0;ii<_nb_calc;ii++)
 | 
			
		||||
    {
 | 
			
		||||
      action.initialize();
 | 
			
		||||
      action.calculate();
 | 
			
		||||
    }
 | 
			
		||||
    _chronos.stop();
 | 
			
		||||
    return _chronos.user_time();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  unsigned long long get_nb_calc( void )
 | 
			
		||||
  {
 | 
			
		||||
    return _nb_calc;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
private:
 | 
			
		||||
  unsigned long long _nb_calc;
 | 
			
		||||
  unsigned long long _nb_init;
 | 
			
		||||
  Portable_Timer _chronos;
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif //_PORTABLE_PERF_ANALYZER_HH
 | 
			
		||||
							
								
								
									
										187
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/timers/portable_timer.hh
									
									
									
									
									
										Executable file
									
								
							
							
						
						
									
										187
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/timers/portable_timer.hh
									
									
									
									
									
										Executable file
									
								
							@@ -0,0 +1,187 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  portable_timer.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)> from boost lib
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:17 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
//  simple_time extracted from the boost library
 | 
			
		||||
//
 | 
			
		||||
#ifndef _PORTABLE_TIMER_HH
 | 
			
		||||
#define _PORTABLE_TIMER_HH
 | 
			
		||||
 | 
			
		||||
#include <ctime>
 | 
			
		||||
#include <cstdlib>
 | 
			
		||||
 | 
			
		||||
#include <time.h>
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#define USEC_IN_SEC 1000000
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
//  timer  -------------------------------------------------------------------//
 | 
			
		||||
 | 
			
		||||
//  A timer object measures CPU time.
 | 
			
		||||
#if defined(_MSC_VER)
 | 
			
		||||
 | 
			
		||||
#define NOMINMAX
 | 
			
		||||
#include <windows.h>
 | 
			
		||||
 | 
			
		||||
/*#ifndef hr_timer
 | 
			
		||||
#include "hr_time.h"
 | 
			
		||||
#define hr_timer
 | 
			
		||||
#endif*/
 | 
			
		||||
 | 
			
		||||
 class Portable_Timer
 | 
			
		||||
 {
 | 
			
		||||
  public:
 | 
			
		||||
 | 
			
		||||
   typedef struct {
 | 
			
		||||
    LARGE_INTEGER start;
 | 
			
		||||
    LARGE_INTEGER stop;
 | 
			
		||||
   } stopWatch;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
   Portable_Timer()
 | 
			
		||||
   {
 | 
			
		||||
	 startVal.QuadPart = 0;
 | 
			
		||||
	 stopVal.QuadPart = 0;
 | 
			
		||||
	 QueryPerformanceFrequency(&frequency);
 | 
			
		||||
   }
 | 
			
		||||
 | 
			
		||||
   void start() { QueryPerformanceCounter(&startVal); }
 | 
			
		||||
 | 
			
		||||
   void stop() { QueryPerformanceCounter(&stopVal); }
 | 
			
		||||
 | 
			
		||||
   double elapsed() {
 | 
			
		||||
	 LARGE_INTEGER time;
 | 
			
		||||
     time.QuadPart = stopVal.QuadPart - startVal.QuadPart;
 | 
			
		||||
     return LIToSecs(time);
 | 
			
		||||
   }
 | 
			
		||||
 | 
			
		||||
   double user_time() { return elapsed(); }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 private:
 | 
			
		||||
 | 
			
		||||
   double LIToSecs(LARGE_INTEGER& L) {
 | 
			
		||||
     return ((double)L.QuadPart /(double)frequency.QuadPart) ;
 | 
			
		||||
   }
 | 
			
		||||
 | 
			
		||||
   LARGE_INTEGER startVal;
 | 
			
		||||
   LARGE_INTEGER stopVal;
 | 
			
		||||
   LARGE_INTEGER frequency;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 }; // Portable_Timer
 | 
			
		||||
 | 
			
		||||
#elif defined(__APPLE__)
 | 
			
		||||
#include <CoreServices/CoreServices.h>
 | 
			
		||||
#include <mach/mach_time.h>
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
class Portable_Timer
 | 
			
		||||
{
 | 
			
		||||
 public:
 | 
			
		||||
 | 
			
		||||
  Portable_Timer()
 | 
			
		||||
  {
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void start()
 | 
			
		||||
  {
 | 
			
		||||
    m_start_time = double(mach_absolute_time())*1e-9;;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void stop()
 | 
			
		||||
  {
 | 
			
		||||
    m_stop_time = double(mach_absolute_time())*1e-9;;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double elapsed()
 | 
			
		||||
  {
 | 
			
		||||
    return  user_time();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double user_time()
 | 
			
		||||
  {
 | 
			
		||||
    return m_stop_time - m_start_time;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
private:
 | 
			
		||||
 | 
			
		||||
  double m_stop_time, m_start_time;
 | 
			
		||||
 | 
			
		||||
}; // Portable_Timer (Apple)
 | 
			
		||||
 | 
			
		||||
#else
 | 
			
		||||
 | 
			
		||||
#include <sys/time.h>
 | 
			
		||||
#include <sys/resource.h>
 | 
			
		||||
#include <unistd.h>
 | 
			
		||||
#include <sys/times.h>
 | 
			
		||||
 | 
			
		||||
class Portable_Timer
 | 
			
		||||
{
 | 
			
		||||
 public:
 | 
			
		||||
 | 
			
		||||
  Portable_Timer()
 | 
			
		||||
  {
 | 
			
		||||
    m_clkid = BtlConfig::Instance.realclock ? CLOCK_REALTIME : CLOCK_PROCESS_CPUTIME_ID;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  Portable_Timer(int clkid) : m_clkid(clkid)
 | 
			
		||||
  {}
 | 
			
		||||
 | 
			
		||||
  void start()
 | 
			
		||||
  {
 | 
			
		||||
    timespec ts;
 | 
			
		||||
    clock_gettime(m_clkid, &ts);
 | 
			
		||||
    m_start_time = double(ts.tv_sec) + 1e-9 * double(ts.tv_nsec);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void stop()
 | 
			
		||||
  {
 | 
			
		||||
    timespec ts;
 | 
			
		||||
    clock_gettime(m_clkid, &ts);
 | 
			
		||||
    m_stop_time = double(ts.tv_sec) + 1e-9 * double(ts.tv_nsec);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double elapsed()
 | 
			
		||||
  {
 | 
			
		||||
    return  user_time();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double user_time()
 | 
			
		||||
  {
 | 
			
		||||
    return m_stop_time - m_start_time;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
private:
 | 
			
		||||
 | 
			
		||||
  int m_clkid;
 | 
			
		||||
  double m_stop_time, m_start_time;
 | 
			
		||||
 | 
			
		||||
}; // Portable_Timer (Linux)
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
#endif  // PORTABLE_TIMER_HPP
 | 
			
		||||
@@ -0,0 +1,108 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  x86_perf_analyzer.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:35 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef _X86_PERF_ANALYSER_HH
 | 
			
		||||
#define _X86_PERF_ANALYSER_HH
 | 
			
		||||
 | 
			
		||||
#include "x86_timer.hh"
 | 
			
		||||
#include "bench_parameter.hh"
 | 
			
		||||
 | 
			
		||||
template<class ACTION>
 | 
			
		||||
class X86_Perf_Analyzer{
 | 
			
		||||
public:
 | 
			
		||||
  X86_Perf_Analyzer( unsigned long long nb_sample=DEFAULT_NB_SAMPLE):_nb_sample(nb_sample),_chronos()
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("X86_Perf_Analyzer Ctor");
 | 
			
		||||
    _chronos.find_frequency();
 | 
			
		||||
  };
 | 
			
		||||
  X86_Perf_Analyzer( const X86_Perf_Analyzer & ){
 | 
			
		||||
    INFOS("Copy Ctor not implemented");
 | 
			
		||||
    exit(0);
 | 
			
		||||
  };
 | 
			
		||||
  ~X86_Perf_Analyzer( void ){
 | 
			
		||||
    MESSAGE("X86_Perf_Analyzer Dtor");
 | 
			
		||||
  };
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  inline double eval_mflops(int size)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    ACTION action(size);
 | 
			
		||||
 | 
			
		||||
    int nb_loop=5;
 | 
			
		||||
    double calculate_time=0.0;
 | 
			
		||||
    double baseline_time=0.0;
 | 
			
		||||
 | 
			
		||||
    for (int j=0 ; j < nb_loop ; j++){
 | 
			
		||||
 | 
			
		||||
      _chronos.clear();
 | 
			
		||||
 | 
			
		||||
      for(int i=0 ; i < _nb_sample  ; i++)
 | 
			
		||||
      {
 | 
			
		||||
        _chronos.start();
 | 
			
		||||
        action.initialize();
 | 
			
		||||
        action.calculate();
 | 
			
		||||
        _chronos.stop();
 | 
			
		||||
        _chronos.add_get_click();
 | 
			
		||||
      }
 | 
			
		||||
 | 
			
		||||
      calculate_time += double(_chronos.get_shortest_clicks())/_chronos.frequency();
 | 
			
		||||
 | 
			
		||||
      if (j==0) action.check_result();
 | 
			
		||||
 | 
			
		||||
      _chronos.clear();
 | 
			
		||||
 | 
			
		||||
      for(int i=0 ; i < _nb_sample  ; i++)
 | 
			
		||||
      {
 | 
			
		||||
        _chronos.start();
 | 
			
		||||
        action.initialize();
 | 
			
		||||
        _chronos.stop();
 | 
			
		||||
        _chronos.add_get_click();
 | 
			
		||||
 | 
			
		||||
      }
 | 
			
		||||
 | 
			
		||||
      baseline_time+=double(_chronos.get_shortest_clicks())/_chronos.frequency();
 | 
			
		||||
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    double corrected_time = (calculate_time-baseline_time)/double(nb_loop);
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
//     INFOS("_nb_sample="<<_nb_sample);
 | 
			
		||||
//     INFOS("baseline_time="<<baseline_time);
 | 
			
		||||
//     INFOS("calculate_time="<<calculate_time);
 | 
			
		||||
//     INFOS("corrected_time="<<corrected_time);
 | 
			
		||||
 | 
			
		||||
//    cout << size <<" "<<baseline_time<<" "<<calculate_time<<" "<<corrected_time<<" "<<action.nb_op_base() << endl;
 | 
			
		||||
 | 
			
		||||
    return action.nb_op_base()/(corrected_time*1000000.0);
 | 
			
		||||
    //return action.nb_op_base()/(calculate_time*1000000.0);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
private:
 | 
			
		||||
 | 
			
		||||
  X86_Timer _chronos;
 | 
			
		||||
  unsigned long long _nb_sample;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										246
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/timers/x86_timer.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										246
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/timers/x86_timer.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,246 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  x86_timer.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:35 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef _X86_TIMER_HH
 | 
			
		||||
#define _X86_TIMER_HH
 | 
			
		||||
 | 
			
		||||
#include <sys/time.h>
 | 
			
		||||
#include <sys/resource.h>
 | 
			
		||||
#include <unistd.h>
 | 
			
		||||
#include <sys/times.h>
 | 
			
		||||
//#include "system_time.h"
 | 
			
		||||
#define u32 unsigned int
 | 
			
		||||
#include <asm/msr.h>
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include <map>
 | 
			
		||||
#include <fstream>
 | 
			
		||||
#include <string>
 | 
			
		||||
#include <iostream>
 | 
			
		||||
 | 
			
		||||
// frequence de la becanne en Hz
 | 
			
		||||
//#define FREQUENCY 648000000
 | 
			
		||||
//#define FREQUENCY 1400000000
 | 
			
		||||
#define FREQUENCY 1695000000
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
class X86_Timer {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  X86_Timer( void ):_frequency(FREQUENCY),_nb_sample(0)
 | 
			
		||||
  {
 | 
			
		||||
    MESSAGE("X86_Timer Default Ctor");    
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline void start( void ){
 | 
			
		||||
 | 
			
		||||
    rdtsc(_click_start.n32[0],_click_start.n32[1]);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  inline void stop( void ){
 | 
			
		||||
 | 
			
		||||
    rdtsc(_click_stop.n32[0],_click_stop.n32[1]);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
 | 
			
		||||
  inline double frequency( void ){
 | 
			
		||||
    return _frequency;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double get_elapsed_time_in_second( void ){
 | 
			
		||||
 | 
			
		||||
    return (_click_stop.n64-_click_start.n64)/double(FREQUENCY);
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  }    
 | 
			
		||||
 | 
			
		||||
  unsigned long long  get_click( void ){
 | 
			
		||||
    
 | 
			
		||||
    return (_click_stop.n64-_click_start.n64);
 | 
			
		||||
 | 
			
		||||
  }    
 | 
			
		||||
 | 
			
		||||
  inline void find_frequency( void ){
 | 
			
		||||
 | 
			
		||||
    time_t initial, final;
 | 
			
		||||
    int dummy=2;
 | 
			
		||||
 | 
			
		||||
    initial = time(0);
 | 
			
		||||
    start();
 | 
			
		||||
    do {
 | 
			
		||||
      dummy+=2;
 | 
			
		||||
    }
 | 
			
		||||
    while(time(0)==initial);
 | 
			
		||||
    // On est au debut d'un cycle d'une seconde !!!
 | 
			
		||||
    initial = time(0);
 | 
			
		||||
    start();
 | 
			
		||||
    do {
 | 
			
		||||
      dummy+=2;
 | 
			
		||||
    }
 | 
			
		||||
    while(time(0)==initial);
 | 
			
		||||
    final=time(0);
 | 
			
		||||
    stop();
 | 
			
		||||
    //    INFOS("fine grained time : "<<  get_elapsed_time_in_second());
 | 
			
		||||
    //  INFOS("coarse grained time : "<<  final-initial);
 | 
			
		||||
    _frequency=_frequency*get_elapsed_time_in_second()/double(final-initial);
 | 
			
		||||
    ///  INFOS("CPU frequency : "<<  _frequency);        
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void  add_get_click( void ){
 | 
			
		||||
       
 | 
			
		||||
    _nb_sample++;
 | 
			
		||||
    _counted_clicks[get_click()]++;
 | 
			
		||||
    fill_history_clicks();
 | 
			
		||||
 | 
			
		||||
  }    
 | 
			
		||||
 | 
			
		||||
  void dump_statistics(string filemane){
 | 
			
		||||
    
 | 
			
		||||
    ofstream outfile (filemane.c_str(),ios::out) ;
 | 
			
		||||
 | 
			
		||||
    std::map<unsigned long long , unsigned long long>::iterator itr;
 | 
			
		||||
    for(itr=_counted_clicks.begin() ; itr!=_counted_clicks.end()  ; itr++)
 | 
			
		||||
      {      
 | 
			
		||||
      outfile  << (*itr).first << "  " << (*itr).second << endl ;       
 | 
			
		||||
      }      
 | 
			
		||||
    
 | 
			
		||||
    outfile.close();
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void dump_history(string filemane){
 | 
			
		||||
    
 | 
			
		||||
    ofstream outfile (filemane.c_str(),ios::out) ;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
    for(int i=0 ; i<_history_mean_clicks.size() ; i++)
 | 
			
		||||
      {      
 | 
			
		||||
	outfile  << i << " " 
 | 
			
		||||
		 << _history_mean_clicks[i] << " " 
 | 
			
		||||
		 << _history_shortest_clicks[i] << " " 
 | 
			
		||||
		 << _history_most_occured_clicks[i] << endl ;
 | 
			
		||||
      }      
 | 
			
		||||
    
 | 
			
		||||
    outfile.close();
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
     
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  double get_mean_clicks( void ){
 | 
			
		||||
    
 | 
			
		||||
    std::map<unsigned long long,unsigned long long>::iterator itr;
 | 
			
		||||
    
 | 
			
		||||
    unsigned long long mean_clicks=0;
 | 
			
		||||
 | 
			
		||||
    for(itr=_counted_clicks.begin() ; itr!=_counted_clicks.end()  ; itr++)
 | 
			
		||||
      {      
 | 
			
		||||
	
 | 
			
		||||
	mean_clicks+=(*itr).second*(*itr).first;
 | 
			
		||||
      }      
 | 
			
		||||
 | 
			
		||||
    return mean_clicks/double(_nb_sample);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  double get_shortest_clicks( void ){
 | 
			
		||||
    
 | 
			
		||||
    return double((*_counted_clicks.begin()).first);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  void fill_history_clicks( void ){
 | 
			
		||||
 | 
			
		||||
    _history_mean_clicks.push_back(get_mean_clicks());
 | 
			
		||||
    _history_shortest_clicks.push_back(get_shortest_clicks());
 | 
			
		||||
    _history_most_occured_clicks.push_back(get_most_occured_clicks());
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  double get_most_occured_clicks( void ){
 | 
			
		||||
 | 
			
		||||
    unsigned long long moc=0;
 | 
			
		||||
    unsigned long long max_occurence=0;
 | 
			
		||||
 | 
			
		||||
    std::map<unsigned long long,unsigned long long>::iterator itr;
 | 
			
		||||
 | 
			
		||||
    for(itr=_counted_clicks.begin() ; itr!=_counted_clicks.end()  ; itr++)
 | 
			
		||||
      {      
 | 
			
		||||
	
 | 
			
		||||
	if (max_occurence<=(*itr).second){
 | 
			
		||||
	  max_occurence=(*itr).second;
 | 
			
		||||
	  moc=(*itr).first;
 | 
			
		||||
	}
 | 
			
		||||
      }      
 | 
			
		||||
    
 | 
			
		||||
    return double(moc);    
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
  void clear( void )
 | 
			
		||||
  {
 | 
			
		||||
    _counted_clicks.clear();
 | 
			
		||||
 | 
			
		||||
    _history_mean_clicks.clear();
 | 
			
		||||
    _history_shortest_clicks.clear();
 | 
			
		||||
    _history_most_occured_clicks.clear();
 | 
			
		||||
 | 
			
		||||
    _nb_sample=0;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
    
 | 
			
		||||
private :
 | 
			
		||||
  
 | 
			
		||||
  union
 | 
			
		||||
  {
 | 
			
		||||
    unsigned long int n32[2] ;
 | 
			
		||||
    unsigned long long n64 ;
 | 
			
		||||
  } _click_start;
 | 
			
		||||
 | 
			
		||||
  union
 | 
			
		||||
  {
 | 
			
		||||
    unsigned long int n32[2] ;
 | 
			
		||||
    unsigned long long n64 ;
 | 
			
		||||
  } _click_stop;
 | 
			
		||||
 | 
			
		||||
  double _frequency ;
 | 
			
		||||
 | 
			
		||||
  map<unsigned long long,unsigned long long> _counted_clicks;
 | 
			
		||||
 | 
			
		||||
  vector<double> _history_mean_clicks;
 | 
			
		||||
  vector<double> _history_shortest_clicks;
 | 
			
		||||
  vector<double> _history_most_occured_clicks;
 | 
			
		||||
 | 
			
		||||
  unsigned long long _nb_sample;
 | 
			
		||||
 | 
			
		||||
  
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
@@ -0,0 +1,70 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  size_lin_log.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  mar d<>c 3 18:59:37 CET 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef SIZE_LIN_LOG
 | 
			
		||||
#define SIZE_LIN_LOG
 | 
			
		||||
 | 
			
		||||
#include "size_log.hh"
 | 
			
		||||
 | 
			
		||||
template<class Vector>
 | 
			
		||||
void size_lin_log(const int nb_point, const int /*size_min*/, const int size_max, Vector & X)
 | 
			
		||||
{
 | 
			
		||||
  int ten=10;
 | 
			
		||||
  int nine=9;
 | 
			
		||||
 | 
			
		||||
  X.resize(nb_point);
 | 
			
		||||
 | 
			
		||||
  if (nb_point>ten){
 | 
			
		||||
 | 
			
		||||
    for (int i=0;i<nine;i++){
 | 
			
		||||
      
 | 
			
		||||
      X[i]=i+1;
 | 
			
		||||
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    Vector log_size;
 | 
			
		||||
    size_log(nb_point-nine,ten,size_max,log_size);
 | 
			
		||||
 | 
			
		||||
    for (int i=0;i<nb_point-nine;i++){
 | 
			
		||||
      
 | 
			
		||||
      X[i+nine]=log_size[i];
 | 
			
		||||
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
  else{
 | 
			
		||||
 | 
			
		||||
    for (int i=0;i<nb_point;i++){
 | 
			
		||||
      
 | 
			
		||||
      X[i]=i+1;
 | 
			
		||||
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 //  for (int i=0;i<nb_point;i++){
 | 
			
		||||
    
 | 
			
		||||
//        INFOS("computed sizes : X["<<i<<"]="<<X[i]);
 | 
			
		||||
    
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
  
 | 
			
		||||
#endif
 | 
			
		||||
    
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
@@ -0,0 +1,54 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  size_log.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:17 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef SIZE_LOG
 | 
			
		||||
#define SIZE_LOG
 | 
			
		||||
 | 
			
		||||
#include "math.h"
 | 
			
		||||
// The Vector class must satisfy the following part of STL vector concept :
 | 
			
		||||
//            resize() method
 | 
			
		||||
//            [] operator for seting element
 | 
			
		||||
// the vector element are int compatible.
 | 
			
		||||
template<class Vector>
 | 
			
		||||
void size_log(const int nb_point, const int size_min, const int size_max, Vector & X)
 | 
			
		||||
{
 | 
			
		||||
  X.resize(nb_point);
 | 
			
		||||
 | 
			
		||||
  float ls_min=log(float(size_min));
 | 
			
		||||
  float ls_max=log(float(size_max));
 | 
			
		||||
 | 
			
		||||
  float ls=0.0;
 | 
			
		||||
 | 
			
		||||
  float delta_ls=(ls_max-ls_min)/(float(nb_point-1));
 | 
			
		||||
 | 
			
		||||
  int size=0;
 | 
			
		||||
 | 
			
		||||
  for (int i=0;i<nb_point;i++){
 | 
			
		||||
 | 
			
		||||
    ls = ls_min + float(i)*delta_ls ;
 | 
			
		||||
    
 | 
			
		||||
    size=int(exp(ls)); 
 | 
			
		||||
 | 
			
		||||
    X[i]=size;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
@@ -0,0 +1,90 @@
 | 
			
		||||
//=============================================================================
 | 
			
		||||
// File      : utilities.h
 | 
			
		||||
// Created   : mar jun 19 13:18:14 CEST 2001
 | 
			
		||||
// Author    : Antoine YESSAYAN, Paul RASCLE, EDF
 | 
			
		||||
// Project   : SALOME
 | 
			
		||||
// Copyright : EDF 2001
 | 
			
		||||
// $Header$
 | 
			
		||||
//=============================================================================
 | 
			
		||||
 | 
			
		||||
/* ---  Definition macros file to print information if _DEBUG_ is defined --- */
 | 
			
		||||
 | 
			
		||||
# ifndef UTILITIES_H
 | 
			
		||||
# define UTILITIES_H
 | 
			
		||||
 | 
			
		||||
# include <stdlib.h>
 | 
			
		||||
//# include <iostream> ok for gcc3.01
 | 
			
		||||
# include <iostream>
 | 
			
		||||
 | 
			
		||||
/* ---  INFOS is always defined (without _DEBUG_): to be used for warnings, with release version --- */
 | 
			
		||||
 | 
			
		||||
# define HEREWEARE cout<<flush ; cerr << __FILE__ << " [" << __LINE__ << "] : " << flush ;
 | 
			
		||||
# define INFOS(chain) {HEREWEARE ; cerr << chain << endl ;}
 | 
			
		||||
# define PYSCRIPT(chain) {cout<<flush ; cerr << "---PYSCRIPT--- " << chain << endl ;}
 | 
			
		||||
 | 
			
		||||
/* --- To print date and time of compilation of current source on stdout --- */
 | 
			
		||||
 | 
			
		||||
# if defined ( __GNUC__ )
 | 
			
		||||
# define COMPILER		"g++" ;
 | 
			
		||||
# elif defined ( __sun )
 | 
			
		||||
# define COMPILER		"CC" ;
 | 
			
		||||
# elif defined ( __KCC )
 | 
			
		||||
# define COMPILER		"KCC" ;
 | 
			
		||||
# elif defined ( __PGI )
 | 
			
		||||
# define COMPILER		"pgCC" ;
 | 
			
		||||
# else
 | 
			
		||||
# define COMPILER		"undefined" ;
 | 
			
		||||
# endif
 | 
			
		||||
 | 
			
		||||
# ifdef INFOS_COMPILATION
 | 
			
		||||
# error INFOS_COMPILATION already defined
 | 
			
		||||
# endif
 | 
			
		||||
# define INFOS_COMPILATION	{\
 | 
			
		||||
					cerr << flush;\
 | 
			
		||||
					cout << __FILE__ ;\
 | 
			
		||||
					cout << " [" << __LINE__ << "] : " ;\
 | 
			
		||||
					cout << "COMPILED with " << COMPILER ;\
 | 
			
		||||
					cout << ", " << __DATE__ ; \
 | 
			
		||||
					cout << " at " << __TIME__ << endl ;\
 | 
			
		||||
					cout << "\n\n" ;\
 | 
			
		||||
					cout << flush ;\
 | 
			
		||||
				}
 | 
			
		||||
 | 
			
		||||
# ifdef _DEBUG_
 | 
			
		||||
 | 
			
		||||
/* --- the following MACROS are useful at debug time --- */
 | 
			
		||||
 | 
			
		||||
# define HERE cout<<flush ; cerr << "- Trace " << __FILE__ << " [" << __LINE__ << "] : " << flush ;
 | 
			
		||||
# define SCRUTE(var) HERE ; cerr << #var << "=" << var << endl ;
 | 
			
		||||
# define MESSAGE(chain) {HERE ; cerr << chain << endl ;}
 | 
			
		||||
# define INTERRUPTION(code) HERE ; cerr << "INTERRUPTION return code= " << code << endl ; exit(code) ;
 | 
			
		||||
 | 
			
		||||
# ifndef ASSERT
 | 
			
		||||
# define ASSERT(condition) if (!(condition)){ HERE ; cerr << "CONDITION " << #condition << " NOT VERIFIED"<< endl ; INTERRUPTION(1) ;}
 | 
			
		||||
# endif /* ASSERT */
 | 
			
		||||
 | 
			
		||||
#define REPERE cout<<flush ; cerr << "   --------------" << endl << flush ;
 | 
			
		||||
#define BEGIN_OF(chain) {REPERE ; HERE ; cerr << "Begin of: " << chain << endl ; REPERE ; }
 | 
			
		||||
#define END_OF(chain) {REPERE ; HERE ; cerr << "Normal end of: " << chain << endl ; REPERE ; }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
# else /* ifdef _DEBUG_*/
 | 
			
		||||
 | 
			
		||||
# define HERE
 | 
			
		||||
# define SCRUTE(var)
 | 
			
		||||
# define MESSAGE(chain)
 | 
			
		||||
# define INTERRUPTION(code)
 | 
			
		||||
 | 
			
		||||
# ifndef ASSERT
 | 
			
		||||
# define ASSERT(condition)
 | 
			
		||||
# endif /* ASSERT */
 | 
			
		||||
 | 
			
		||||
#define REPERE
 | 
			
		||||
#define BEGIN_OF(chain)
 | 
			
		||||
#define END_OF(chain)
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
# endif /* ifdef _DEBUG_*/
 | 
			
		||||
 | 
			
		||||
# endif /* ifndef UTILITIES_H */
 | 
			
		||||
							
								
								
									
										75
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/utils/xy_file.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										75
									
								
								cs440-acg/ext/eigen/bench/btl/generic_bench/utils/xy_file.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,75 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  dump_file_x_y.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:20 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef XY_FILE_HH
 | 
			
		||||
#define XY_FILE_HH
 | 
			
		||||
#include <fstream>
 | 
			
		||||
#include <iostream>
 | 
			
		||||
#include <string>
 | 
			
		||||
#include <vector>
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
bool read_xy_file(const std::string & filename, std::vector<int> & tab_sizes,
 | 
			
		||||
                  std::vector<double> & tab_mflops, bool quiet = false)
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  std::ifstream input_file (filename.c_str(),std::ios::in);
 | 
			
		||||
 | 
			
		||||
  if (!input_file){
 | 
			
		||||
    if (!quiet) {
 | 
			
		||||
      INFOS("!!! Error opening "<<filename);
 | 
			
		||||
    }
 | 
			
		||||
    return false;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  int nb_point=0;
 | 
			
		||||
  int size=0;
 | 
			
		||||
  double mflops=0;
 | 
			
		||||
 | 
			
		||||
  while (input_file >> size >> mflops ){
 | 
			
		||||
    nb_point++;
 | 
			
		||||
    tab_sizes.push_back(size);
 | 
			
		||||
    tab_mflops.push_back(mflops);
 | 
			
		||||
  }
 | 
			
		||||
  SCRUTE(nb_point);
 | 
			
		||||
 | 
			
		||||
  input_file.close();
 | 
			
		||||
  return true;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
// The Vector class must satisfy the following part of STL vector concept :
 | 
			
		||||
//            resize() method
 | 
			
		||||
//            [] operator for seting element
 | 
			
		||||
// the vector element must have the << operator define
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class Vector_A, class Vector_B>
 | 
			
		||||
void dump_xy_file(const Vector_A & X, const Vector_B & Y, const std::string & filename){
 | 
			
		||||
  
 | 
			
		||||
  ofstream outfile (filename.c_str(),ios::out) ;
 | 
			
		||||
  int size=X.size();
 | 
			
		||||
  
 | 
			
		||||
  for (int i=0;i<size;i++)
 | 
			
		||||
    outfile << X[i] << " " << Y[i] << endl;
 | 
			
		||||
 | 
			
		||||
  outfile.close();
 | 
			
		||||
} 
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										47
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										47
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,47 @@
 | 
			
		||||
 | 
			
		||||
find_package(ATLAS)
 | 
			
		||||
if (ATLAS_FOUND)
 | 
			
		||||
  btl_add_bench(btl_atlas main.cpp)
 | 
			
		||||
  if(BUILD_btl_atlas)
 | 
			
		||||
    target_link_libraries(btl_atlas ${ATLAS_LIBRARIES})
 | 
			
		||||
    set_target_properties(btl_atlas PROPERTIES COMPILE_FLAGS "-DCBLASNAME=ATLAS -DHAS_LAPACK=1")
 | 
			
		||||
  endif(BUILD_btl_atlas)
 | 
			
		||||
endif (ATLAS_FOUND)
 | 
			
		||||
 | 
			
		||||
find_package(MKL)
 | 
			
		||||
if (MKL_FOUND)
 | 
			
		||||
  btl_add_bench(btl_mkl main.cpp)
 | 
			
		||||
  if(BUILD_btl_mkl)
 | 
			
		||||
    target_link_libraries(btl_mkl ${MKL_LIBRARIES})
 | 
			
		||||
    set_target_properties(btl_mkl PROPERTIES COMPILE_FLAGS "-DCBLASNAME=INTEL_MKL -DHAS_LAPACK=1")
 | 
			
		||||
  endif(BUILD_btl_mkl)
 | 
			
		||||
endif (MKL_FOUND)
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
find_package(OPENBLAS)
 | 
			
		||||
if (OPENBLAS_FOUND)
 | 
			
		||||
  btl_add_bench(btl_openblas main.cpp)
 | 
			
		||||
  if(BUILD_btl_openblas)
 | 
			
		||||
    target_link_libraries(btl_openblas ${OPENBLAS_LIBRARIES} )
 | 
			
		||||
    set_target_properties(btl_openblas PROPERTIES COMPILE_FLAGS "-DCBLASNAME=OPENBLAS")
 | 
			
		||||
  endif(BUILD_btl_openblas)
 | 
			
		||||
endif (OPENBLAS_FOUND)
 | 
			
		||||
 | 
			
		||||
find_package(ACML)
 | 
			
		||||
if (ACML_FOUND)
 | 
			
		||||
  btl_add_bench(btl_acml main.cpp)
 | 
			
		||||
  if(BUILD_btl_acml)
 | 
			
		||||
    target_link_libraries(btl_acml ${ACML_LIBRARIES} )
 | 
			
		||||
    set_target_properties(btl_acml PROPERTIES COMPILE_FLAGS "-DCBLASNAME=ACML -DHAS_LAPACK=1")
 | 
			
		||||
  endif(BUILD_btl_acml)
 | 
			
		||||
endif (ACML_FOUND)
 | 
			
		||||
 | 
			
		||||
if(Eigen_SOURCE_DIR AND CMAKE_Fortran_COMPILER_WORKS)
 | 
			
		||||
  # we are inside Eigen and blas/lapack interface is compilable
 | 
			
		||||
  include_directories(${Eigen_SOURCE_DIR})
 | 
			
		||||
  btl_add_bench(btl_eigenblas main.cpp)
 | 
			
		||||
  if(BUILD_btl_eigenblas)
 | 
			
		||||
    target_link_libraries(btl_eigenblas eigen_blas eigen_lapack )
 | 
			
		||||
    set_target_properties(btl_eigenblas PROPERTIES COMPILE_FLAGS "-DCBLASNAME=EigenBLAS")
 | 
			
		||||
  endif()
 | 
			
		||||
endif()
 | 
			
		||||
							
								
								
									
										675
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/blas.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										675
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/blas.h
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,675 @@
 | 
			
		||||
#ifndef BLAS_H
 | 
			
		||||
#define BLAS_H
 | 
			
		||||
 | 
			
		||||
#define BLASFUNC(FUNC) FUNC##_
 | 
			
		||||
 | 
			
		||||
#ifdef __WIN64__
 | 
			
		||||
typedef long long BLASLONG;
 | 
			
		||||
typedef unsigned long long BLASULONG;
 | 
			
		||||
#else
 | 
			
		||||
typedef long BLASLONG;
 | 
			
		||||
typedef unsigned long BLASULONG;
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(xerbla)(const char *, int *info, int);
 | 
			
		||||
 | 
			
		||||
float  BLASFUNC(sdot)  (int *, float  *, int *, float  *, int *);
 | 
			
		||||
float  BLASFUNC(sdsdot)(int *, float  *,        float  *, int *, float  *, int *);
 | 
			
		||||
 | 
			
		||||
double BLASFUNC(dsdot) (int *, float  *, int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(ddot)  (int *, double *, int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qdot)  (int *, double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
#if defined(F_INTERFACE_GFORT) && !defined(__64BIT__)
 | 
			
		||||
int   BLASFUNC(cdotu)  (int *, float  * , int *, float  *,  int *);
 | 
			
		||||
int   BLASFUNC(cdotc)  (int *, float  *,  int *, float  *,  int *);
 | 
			
		||||
void  BLASFUNC(zdotu)  (double *, int *, double  *, int *, double  *, int *);
 | 
			
		||||
void  BLASFUNC(zdotc)  (double *, int *, double  *, int *, double  *, int *);
 | 
			
		||||
void  BLASFUNC(xdotu)  (double *, int *, double  *, int *, double  *, int *);
 | 
			
		||||
void  BLASFUNC(xdotc)  (double *, int *, double  *, int *, double  *, int *);
 | 
			
		||||
#elif  defined(F_INTERFACE_F2C) || \
 | 
			
		||||
     defined(F_INTERFACE_PGI) || \
 | 
			
		||||
     defined(F_INTERFACE_GFORT) || \
 | 
			
		||||
    (defined(F_INTERFACE_PATHSCALE) && defined(__64BIT__))
 | 
			
		||||
void  BLASFUNC(cdotu)  (float *,  int *, float  * , int *, float  *,  int *);
 | 
			
		||||
void  BLASFUNC(cdotc)  (float *,  int *, float  *,  int *, float  *,  int *);
 | 
			
		||||
void  BLASFUNC(zdotu)  (double *, int *, double  *, int *, double  *, int *);
 | 
			
		||||
void  BLASFUNC(zdotc)  (double *, int *, double  *, int *, double  *, int *);
 | 
			
		||||
void  BLASFUNC(xdotu)  (double *, int *, double  *, int *, double  *, int *);
 | 
			
		||||
void  BLASFUNC(xdotc)  (double *, int *, double  *, int *, double  *, int *);
 | 
			
		||||
#else
 | 
			
		||||
std::complex<float>   BLASFUNC(cdotu)  (int *, float  *, int *, float  *, int *);
 | 
			
		||||
std::complex<float>   BLASFUNC(cdotc)  (int *, float  *, int *, float  *, int *);
 | 
			
		||||
std::complex<double>  BLASFUNC(zdotu)  (int *, double  *, int *, double  *, int *);
 | 
			
		||||
std::complex<double>  BLASFUNC(zdotc)  (int *, double  *, int *, double  *, int *);
 | 
			
		||||
double  BLASFUNC(xdotu)  (int *, double  *, int *, double  *, int *);
 | 
			
		||||
double  BLASFUNC(xdotc)  (int *, double  *, int *, double  *, int *);
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
int  BLASFUNC(cdotuw)  (int *, float  *, int *, float  *, int *, float*);
 | 
			
		||||
int  BLASFUNC(cdotcw)  (int *, float  *, int *, float  *, int *, float*);
 | 
			
		||||
int  BLASFUNC(zdotuw)  (int *, double  *, int *, double  *, int *, double*);
 | 
			
		||||
int  BLASFUNC(zdotcw)  (int *, double  *, int *, double  *, int *, double*);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(saxpy) (int *, float  *, float  *, int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(daxpy) (int *, double *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(qaxpy) (int *, double *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(caxpy) (int *, float  *, float  *, int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(zaxpy) (int *, double *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(xaxpy) (int *, double *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(caxpyc)(int *, float  *, float  *, int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(zaxpyc)(int *, double *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(xaxpyc)(int *, double *, double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(scopy) (int *, float  *, int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(dcopy) (int *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(qcopy) (int *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(ccopy) (int *, float  *, int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(zcopy) (int *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(xcopy) (int *, double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(sswap) (int *, float  *, int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(dswap) (int *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(qswap) (int *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(cswap) (int *, float  *, int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(zswap) (int *, double *, int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(xswap) (int *, double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
float  BLASFUNC(sasum) (int *, float  *, int *);
 | 
			
		||||
float  BLASFUNC(scasum)(int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(dasum) (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qasum) (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(dzasum)(int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qxasum)(int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(isamax)(int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(idamax)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(iqamax)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(icamax)(int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(izamax)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(ixamax)(int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(ismax) (int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(idmax) (int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(iqmax) (int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(icmax) (int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(izmax) (int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(ixmax) (int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(isamin)(int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(idamin)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(iqamin)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(icamin)(int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(izamin)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(ixamin)(int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(ismin)(int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(idmin)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(iqmin)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(icmin)(int *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(izmin)(int *, double *, int *);
 | 
			
		||||
int    BLASFUNC(ixmin)(int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
float  BLASFUNC(samax) (int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(damax) (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qamax) (int *, double *, int *);
 | 
			
		||||
float  BLASFUNC(scamax)(int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(dzamax)(int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qxamax)(int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
float  BLASFUNC(samin) (int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(damin) (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qamin) (int *, double *, int *);
 | 
			
		||||
float  BLASFUNC(scamin)(int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(dzamin)(int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qxamin)(int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
float  BLASFUNC(smax)  (int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(dmax)  (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qmax)  (int *, double *, int *);
 | 
			
		||||
float  BLASFUNC(scmax) (int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(dzmax) (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qxmax) (int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
float  BLASFUNC(smin)  (int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(dmin)  (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qmin)  (int *, double *, int *);
 | 
			
		||||
float  BLASFUNC(scmin) (int *, float  *, int *);
 | 
			
		||||
double BLASFUNC(dzmin) (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qxmin) (int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(sscal) (int *,  float  *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(dscal) (int *,  double *, double *, int *);
 | 
			
		||||
int    BLASFUNC(qscal) (int *,  double *, double *, int *);
 | 
			
		||||
int    BLASFUNC(cscal) (int *,  float  *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(zscal) (int *,  double *, double *, int *);
 | 
			
		||||
int    BLASFUNC(xscal) (int *,  double *, double *, int *);
 | 
			
		||||
int    BLASFUNC(csscal)(int *,  float  *, float  *, int *);
 | 
			
		||||
int    BLASFUNC(zdscal)(int *,  double *, double *, int *);
 | 
			
		||||
int    BLASFUNC(xqscal)(int *,  double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
float  BLASFUNC(snrm2) (int *, float  *, int *);
 | 
			
		||||
float  BLASFUNC(scnrm2)(int *, float  *, int *);
 | 
			
		||||
 | 
			
		||||
double BLASFUNC(dnrm2) (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qnrm2) (int *, double *, int *);
 | 
			
		||||
double BLASFUNC(dznrm2)(int *, double *, int *);
 | 
			
		||||
double BLASFUNC(qxnrm2)(int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(srot)  (int *, float  *, int *, float  *, int *, float  *, float  *);
 | 
			
		||||
int    BLASFUNC(drot)  (int *, double *, int *, double *, int *, double *, double *);
 | 
			
		||||
int    BLASFUNC(qrot)  (int *, double *, int *, double *, int *, double *, double *);
 | 
			
		||||
int    BLASFUNC(csrot) (int *, float  *, int *, float  *, int *, float  *, float  *);
 | 
			
		||||
int    BLASFUNC(zdrot) (int *, double *, int *, double *, int *, double *, double *);
 | 
			
		||||
int    BLASFUNC(xqrot) (int *, double *, int *, double *, int *, double *, double *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(srotg) (float  *, float  *, float  *, float  *);
 | 
			
		||||
int    BLASFUNC(drotg) (double *, double *, double *, double *);
 | 
			
		||||
int    BLASFUNC(qrotg) (double *, double *, double *, double *);
 | 
			
		||||
int    BLASFUNC(crotg) (float  *, float  *, float  *, float  *);
 | 
			
		||||
int    BLASFUNC(zrotg) (double *, double *, double *, double *);
 | 
			
		||||
int    BLASFUNC(xrotg) (double *, double *, double *, double *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(srotmg)(float  *, float  *, float  *, float  *, float  *);
 | 
			
		||||
int    BLASFUNC(drotmg)(double *, double *, double *, double *, double *);
 | 
			
		||||
 | 
			
		||||
int    BLASFUNC(srotm) (int *, float  *, int *, float  *, int *, float  *);
 | 
			
		||||
int    BLASFUNC(drotm) (int *, double *, int *, double *, int *, double *);
 | 
			
		||||
int    BLASFUNC(qrotm) (int *, double *, int *, double *, int *, double *);
 | 
			
		||||
 | 
			
		||||
/* Level 2 routines */
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sger)(int *,    int *, float *,  float *, int *,
 | 
			
		||||
		   float *,  int *, float *,  int *);
 | 
			
		||||
int BLASFUNC(dger)(int *,    int *, double *, double *, int *,
 | 
			
		||||
		   double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(qger)(int *,    int *, double *, double *, int *,
 | 
			
		||||
		   double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(cgeru)(int *,    int *, float *,  float *, int *,
 | 
			
		||||
		    float *,  int *, float *,  int *);
 | 
			
		||||
int BLASFUNC(cgerc)(int *,    int *, float *,  float *, int *,
 | 
			
		||||
		    float *,  int *, float *,  int *);
 | 
			
		||||
int BLASFUNC(zgeru)(int *,    int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(zgerc)(int *,    int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(xgeru)(int *,    int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(xgerc)(int *,    int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgemv)(char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dgemv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qgemv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(cgemv)(char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zgemv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xgemv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(strsv) (char *, char *, char *, int *, float  *, int *,
 | 
			
		||||
		     float  *, int *);
 | 
			
		||||
int BLASFUNC(dtrsv) (char *, char *, char *, int *, double *, int *,
 | 
			
		||||
		     double *, int *);
 | 
			
		||||
int BLASFUNC(qtrsv) (char *, char *, char *, int *, double *, int *,
 | 
			
		||||
		     double *, int *);
 | 
			
		||||
int BLASFUNC(ctrsv) (char *, char *, char *, int *, float  *, int *,
 | 
			
		||||
		     float  *, int *);
 | 
			
		||||
int BLASFUNC(ztrsv) (char *, char *, char *, int *, double *, int *,
 | 
			
		||||
		     double *, int *);
 | 
			
		||||
int BLASFUNC(xtrsv) (char *, char *, char *, int *, double *, int *,
 | 
			
		||||
		     double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(stpsv) (char *, char *, char *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dtpsv) (char *, char *, char *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qtpsv) (char *, char *, char *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(ctpsv) (char *, char *, char *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(ztpsv) (char *, char *, char *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xtpsv) (char *, char *, char *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(strmv) (char *, char *, char *, int *, float  *, int *,
 | 
			
		||||
		     float  *, int *);
 | 
			
		||||
int BLASFUNC(dtrmv) (char *, char *, char *, int *, double *, int *,
 | 
			
		||||
		     double *, int *);
 | 
			
		||||
int BLASFUNC(qtrmv) (char *, char *, char *, int *, double *, int *,
 | 
			
		||||
		     double *, int *);
 | 
			
		||||
int BLASFUNC(ctrmv) (char *, char *, char *, int *, float  *, int *,
 | 
			
		||||
		     float  *, int *);
 | 
			
		||||
int BLASFUNC(ztrmv) (char *, char *, char *, int *, double *, int *,
 | 
			
		||||
		     double *, int *);
 | 
			
		||||
int BLASFUNC(xtrmv) (char *, char *, char *, int *, double *, int *,
 | 
			
		||||
		     double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(stpmv) (char *, char *, char *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dtpmv) (char *, char *, char *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qtpmv) (char *, char *, char *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(ctpmv) (char *, char *, char *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(ztpmv) (char *, char *, char *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xtpmv) (char *, char *, char *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(stbmv) (char *, char *, char *, int *, int *, float  *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dtbmv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(qtbmv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(ctbmv) (char *, char *, char *, int *, int *, float  *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(ztbmv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(xtbmv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(stbsv) (char *, char *, char *, int *, int *, float  *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dtbsv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(qtbsv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(ctbsv) (char *, char *, char *, int *, int *, float  *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(ztbsv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(xtbsv) (char *, char *, char *, int *, int *, double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(ssymv) (char *, int *, float  *, float *, int *,
 | 
			
		||||
		     float  *, int *, float *, float *, int *);
 | 
			
		||||
int BLASFUNC(dsymv) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qsymv) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(csymv) (char *, int *, float  *, float *, int *,
 | 
			
		||||
		     float  *, int *, float *, float *, int *);
 | 
			
		||||
int BLASFUNC(zsymv) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xsymv) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sspmv) (char *, int *, float  *, float *,
 | 
			
		||||
		     float  *, int *, float *, float *, int *);
 | 
			
		||||
int BLASFUNC(dspmv) (char *, int *, double  *, double *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qspmv) (char *, int *, double  *, double *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(cspmv) (char *, int *, float  *, float *,
 | 
			
		||||
		     float  *, int *, float *, float *, int *);
 | 
			
		||||
int BLASFUNC(zspmv) (char *, int *, double  *, double *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xspmv) (char *, int *, double  *, double *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(ssyr) (char *, int *, float   *, float  *, int *,
 | 
			
		||||
		    float  *, int *);
 | 
			
		||||
int BLASFUNC(dsyr) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *, int *);
 | 
			
		||||
int BLASFUNC(qsyr) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *, int *);
 | 
			
		||||
int BLASFUNC(csyr) (char *, int *, float   *, float  *, int *,
 | 
			
		||||
		    float  *, int *);
 | 
			
		||||
int BLASFUNC(zsyr) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *, int *);
 | 
			
		||||
int BLASFUNC(xsyr) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(ssyr2) (char *, int *, float   *,
 | 
			
		||||
		     float  *, int *, float  *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dsyr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(qsyr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(csyr2) (char *, int *, float   *,
 | 
			
		||||
		     float  *, int *, float  *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zsyr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(xsyr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sspr) (char *, int *, float   *, float  *, int *,
 | 
			
		||||
		    float  *);
 | 
			
		||||
int BLASFUNC(dspr) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *);
 | 
			
		||||
int BLASFUNC(qspr) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *);
 | 
			
		||||
int BLASFUNC(cspr) (char *, int *, float   *, float  *, int *,
 | 
			
		||||
		    float  *);
 | 
			
		||||
int BLASFUNC(zspr) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *);
 | 
			
		||||
int BLASFUNC(xspr) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sspr2) (char *, int *, float   *,
 | 
			
		||||
		     float  *, int *, float  *, int *, float  *);
 | 
			
		||||
int BLASFUNC(dspr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *);
 | 
			
		||||
int BLASFUNC(qspr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *);
 | 
			
		||||
int BLASFUNC(cspr2) (char *, int *, float   *,
 | 
			
		||||
		     float  *, int *, float  *, int *, float  *);
 | 
			
		||||
int BLASFUNC(zspr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *);
 | 
			
		||||
int BLASFUNC(xspr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(cher) (char *, int *, float   *, float  *, int *,
 | 
			
		||||
		    float  *, int *);
 | 
			
		||||
int BLASFUNC(zher) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *, int *);
 | 
			
		||||
int BLASFUNC(xher) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		    double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(chpr) (char *, int *, float   *, float  *, int *, float  *);
 | 
			
		||||
int BLASFUNC(zhpr) (char *, int *, double  *, double *, int *, double *);
 | 
			
		||||
int BLASFUNC(xhpr) (char *, int *, double  *, double *, int *, double *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(cher2) (char *, int *, float   *,
 | 
			
		||||
		     float  *, int *, float  *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zher2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(xher2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(chpr2) (char *, int *, float   *,
 | 
			
		||||
		     float  *, int *, float  *, int *, float  *);
 | 
			
		||||
int BLASFUNC(zhpr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *);
 | 
			
		||||
int BLASFUNC(xhpr2) (char *, int *, double  *,
 | 
			
		||||
		     double *, int *, double *, int *, double *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(chemv) (char *, int *, float  *, float *, int *,
 | 
			
		||||
		     float  *, int *, float *, float *, int *);
 | 
			
		||||
int BLASFUNC(zhemv) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xhemv) (char *, int *, double  *, double *, int *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(chpmv) (char *, int *, float  *, float *,
 | 
			
		||||
		     float  *, int *, float *, float *, int *);
 | 
			
		||||
int BLASFUNC(zhpmv) (char *, int *, double  *, double *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xhpmv) (char *, int *, double  *, double *,
 | 
			
		||||
		     double  *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(snorm)(char *, int *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dnorm)(char *, int *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(cnorm)(char *, int *, int *, float  *, int *);
 | 
			
		||||
int BLASFUNC(znorm)(char *, int *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgbmv)(char *, int *, int *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dgbmv)(char *, int *, int *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qgbmv)(char *, int *, int *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(cgbmv)(char *, int *, int *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zgbmv)(char *, int *, int *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xgbmv)(char *, int *, int *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(ssbmv)(char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dsbmv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qsbmv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(csbmv)(char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zsbmv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xsbmv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(chbmv)(char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zhbmv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xhbmv)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
/* Level 3 routines */
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgemm)(char *, char *, int *, int *, int *, float *,
 | 
			
		||||
	   float  *, int *, float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dgemm)(char *, char *, int *, int *, int *, double *,
 | 
			
		||||
	   double *, int *, double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qgemm)(char *, char *, int *, int *, int *, double *,
 | 
			
		||||
	   double *, int *, double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(cgemm)(char *, char *, int *, int *, int *, float *,
 | 
			
		||||
	   float  *, int *, float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zgemm)(char *, char *, int *, int *, int *, double *,
 | 
			
		||||
	   double *, int *, double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xgemm)(char *, char *, int *, int *, int *, double *,
 | 
			
		||||
	   double *, int *, double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(cgemm3m)(char *, char *, int *, int *, int *, float *,
 | 
			
		||||
	   float  *, int *, float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zgemm3m)(char *, char *, int *, int *, int *, double *,
 | 
			
		||||
	   double *, int *, double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xgemm3m)(char *, char *, int *, int *, int *, double *,
 | 
			
		||||
	   double *, int *, double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sge2mm)(char *, char *, char *, int *, int *,
 | 
			
		||||
		     float *, float  *, int *, float  *, int *,
 | 
			
		||||
		     float *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dge2mm)(char *, char *, char *, int *, int *,
 | 
			
		||||
		     double *, double  *, int *, double  *, int *,
 | 
			
		||||
		     double *, double  *, int *);
 | 
			
		||||
int BLASFUNC(cge2mm)(char *, char *, char *, int *, int *,
 | 
			
		||||
		     float *, float  *, int *, float  *, int *,
 | 
			
		||||
		     float *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zge2mm)(char *, char *, char *, int *, int *,
 | 
			
		||||
		     double *, double  *, int *, double  *, int *,
 | 
			
		||||
		     double *, double  *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(strsm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   float *,  float *, int *, float *, int *);
 | 
			
		||||
int BLASFUNC(dtrsm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   double *,  double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(qtrsm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   double *,  double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(ctrsm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   float *,  float *, int *, float *, int *);
 | 
			
		||||
int BLASFUNC(ztrsm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   double *,  double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(xtrsm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   double *,  double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(strmm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   float *,  float *, int *, float *, int *);
 | 
			
		||||
int BLASFUNC(dtrmm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   double *,  double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(qtrmm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   double *,  double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(ctrmm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   float *,  float *, int *, float *, int *);
 | 
			
		||||
int BLASFUNC(ztrmm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   double *,  double *, int *, double *, int *);
 | 
			
		||||
int BLASFUNC(xtrmm)(char *, char *, char *, char *, int *, int *,
 | 
			
		||||
	   double *,  double *, int *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(ssymm)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dsymm)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qsymm)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(csymm)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zsymm)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xsymm)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(csymm3m)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zsymm3m)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xsymm3m)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(ssyrk)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dsyrk)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qsyrk)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, double *, int *);
 | 
			
		||||
int BLASFUNC(csyrk)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zsyrk)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xsyrk)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(ssyr2k)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(dsyr2k)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double*, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(qsyr2k)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double*, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(csyr2k)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zsyr2k)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double*, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xsyr2k)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double*, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(chemm)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zhemm)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xhemm)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(chemm3m)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float  *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zhemm3m)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xhemm3m)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(cherk)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zherk)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xherk)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(cher2k)(char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zher2k)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double*, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xher2k)(char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double*, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(cher2m)(char *, char *, char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
	   float *, int *, float  *, float  *, int *);
 | 
			
		||||
int BLASFUNC(zher2m)(char *, char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double*, int *, double *, double *, int *);
 | 
			
		||||
int BLASFUNC(xher2m)(char *, char *, char *, int *, int *, double *, double *, int *,
 | 
			
		||||
	   double*, int *, double *, double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgemt)(char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *);
 | 
			
		||||
int BLASFUNC(dgemt)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *);
 | 
			
		||||
int BLASFUNC(cgemt)(char *, int *, int *, float  *, float  *, int *,
 | 
			
		||||
		    float  *, int *);
 | 
			
		||||
int BLASFUNC(zgemt)(char *, int *, int *, double *, double *, int *,
 | 
			
		||||
		    double *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgema)(char *, char *, int *, int *, float  *,
 | 
			
		||||
		    float  *, int *, float *, float  *, int *, float *, int *);
 | 
			
		||||
int BLASFUNC(dgema)(char *, char *, int *, int *, double *,
 | 
			
		||||
		    double *, int *, double*, double *, int *, double*, int *);
 | 
			
		||||
int BLASFUNC(cgema)(char *, char *, int *, int *, float  *,
 | 
			
		||||
		    float  *, int *, float *, float  *, int *, float *, int *);
 | 
			
		||||
int BLASFUNC(zgema)(char *, char *, int *, int *, double *,
 | 
			
		||||
		    double *, int *, double*, double *, int *, double*, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgems)(char *, char *, int *, int *, float  *,
 | 
			
		||||
		    float  *, int *, float *, float  *, int *, float *, int *);
 | 
			
		||||
int BLASFUNC(dgems)(char *, char *, int *, int *, double *,
 | 
			
		||||
		    double *, int *, double*, double *, int *, double*, int *);
 | 
			
		||||
int BLASFUNC(cgems)(char *, char *, int *, int *, float  *,
 | 
			
		||||
		    float  *, int *, float *, float  *, int *, float *, int *);
 | 
			
		||||
int BLASFUNC(zgems)(char *, char *, int *, int *, double *,
 | 
			
		||||
		    double *, int *, double*, double *, int *, double*, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgetf2)(int *, int *, float  *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(dgetf2)(int *, int *, double *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(qgetf2)(int *, int *, double *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(cgetf2)(int *, int *, float  *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(zgetf2)(int *, int *, double *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(xgetf2)(int *, int *, double *, int *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgetrf)(int *, int *, float  *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(dgetrf)(int *, int *, double *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(qgetrf)(int *, int *, double *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(cgetrf)(int *, int *, float  *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(zgetrf)(int *, int *, double *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(xgetrf)(int *, int *, double *, int *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(slaswp)(int *, float  *, int *, int *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(dlaswp)(int *, double *, int *, int *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(qlaswp)(int *, double *, int *, int *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(claswp)(int *, float  *, int *, int *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(zlaswp)(int *, double *, int *, int *, int *, int *, int *);
 | 
			
		||||
int BLASFUNC(xlaswp)(int *, double *, int *, int *, int *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgetrs)(char *, int *, int *, float  *, int *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(dgetrs)(char *, int *, int *, double *, int *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(qgetrs)(char *, int *, int *, double *, int *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(cgetrs)(char *, int *, int *, float  *, int *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(zgetrs)(char *, int *, int *, double *, int *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(xgetrs)(char *, int *, int *, double *, int *, int *, double *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(sgesv)(int *, int *, float  *, int *, int *, float *, int *, int *);
 | 
			
		||||
int BLASFUNC(dgesv)(int *, int *, double *, int *, int *, double*, int *, int *);
 | 
			
		||||
int BLASFUNC(qgesv)(int *, int *, double *, int *, int *, double*, int *, int *);
 | 
			
		||||
int BLASFUNC(cgesv)(int *, int *, float  *, int *, int *, float *, int *, int *);
 | 
			
		||||
int BLASFUNC(zgesv)(int *, int *, double *, int *, int *, double*, int *, int *);
 | 
			
		||||
int BLASFUNC(xgesv)(int *, int *, double *, int *, int *, double*, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(spotf2)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(dpotf2)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(qpotf2)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(cpotf2)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(zpotf2)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(xpotf2)(char *, int *, double *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(spotrf)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(dpotrf)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(qpotrf)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(cpotrf)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(zpotrf)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(xpotrf)(char *, int *, double *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(slauu2)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(dlauu2)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(qlauu2)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(clauu2)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(zlauu2)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(xlauu2)(char *, int *, double *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(slauum)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(dlauum)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(qlauum)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(clauum)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(zlauum)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(xlauum)(char *, int *, double *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(strti2)(char *, char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(dtrti2)(char *, char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(qtrti2)(char *, char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(ctrti2)(char *, char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(ztrti2)(char *, char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(xtrti2)(char *, char *, int *, double *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(strtri)(char *, char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(dtrtri)(char *, char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(qtrtri)(char *, char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(ctrtri)(char *, char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(ztrtri)(char *, char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(xtrtri)(char *, char *, int *, double *, int *, int *);
 | 
			
		||||
 | 
			
		||||
int BLASFUNC(spotri)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(dpotri)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(qpotri)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(cpotri)(char *, int *, float  *, int *, int *);
 | 
			
		||||
int BLASFUNC(zpotri)(char *, int *, double *, int *, int *);
 | 
			
		||||
int BLASFUNC(xpotri)(char *, int *, double *, int *, int *);
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										83
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/blas_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										83
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/blas_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,83 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  blas_interface.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:28 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef blas_PRODUIT_MATRICE_VECTEUR_HH
 | 
			
		||||
#define blas_PRODUIT_MATRICE_VECTEUR_HH
 | 
			
		||||
 | 
			
		||||
#include <c_interface_base.h>
 | 
			
		||||
#include <complex>
 | 
			
		||||
extern "C"
 | 
			
		||||
{
 | 
			
		||||
#include "blas.h"
 | 
			
		||||
 | 
			
		||||
  // Cholesky Factorization
 | 
			
		||||
//   void spotrf_(const char* uplo, const int* n, float *a, const int* ld, int* info);
 | 
			
		||||
//   void dpotrf_(const char* uplo, const int* n, double *a, const int* ld, int* info);
 | 
			
		||||
  void ssytrd_(char *uplo, const int *n, float *a, const int *lda, float *d, float *e, float *tau, float *work, int *lwork, int *info );
 | 
			
		||||
  void dsytrd_(char *uplo, const int *n, double *a, const int *lda, double *d, double *e, double *tau, double *work, int *lwork, int *info );
 | 
			
		||||
  void sgehrd_( const int *n, int *ilo, int *ihi, float *a, const int *lda, float *tau, float *work, int *lwork, int *info );
 | 
			
		||||
  void dgehrd_( const int *n, int *ilo, int *ihi, double *a, const int *lda, double *tau, double *work, int *lwork, int *info );
 | 
			
		||||
 | 
			
		||||
  // LU row pivoting
 | 
			
		||||
//   void dgetrf_( int *m, int *n, double *a, int *lda, int *ipiv, int *info );
 | 
			
		||||
//   void sgetrf_(const int* m, const int* n, float *a, const int* ld, int* ipivot, int* info);
 | 
			
		||||
  // LU full pivoting
 | 
			
		||||
  void sgetc2_(const int* n, float *a, const int *lda, int *ipiv, int *jpiv, int*info );
 | 
			
		||||
  void dgetc2_(const int* n, double *a, const int *lda, int *ipiv, int *jpiv, int*info );
 | 
			
		||||
#ifdef HAS_LAPACK
 | 
			
		||||
#endif
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
#define MAKE_STRING2(S) #S
 | 
			
		||||
#define MAKE_STRING(S) MAKE_STRING2(S)
 | 
			
		||||
 | 
			
		||||
#define CAT2(A,B) A##B
 | 
			
		||||
#define CAT(A,B) CAT2(A,B)
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
template<class real> class blas_interface;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
static char notrans = 'N';
 | 
			
		||||
static char trans = 'T';
 | 
			
		||||
static char nonunit = 'N';
 | 
			
		||||
static char lower = 'L';
 | 
			
		||||
static char right = 'R';
 | 
			
		||||
static char left = 'L';
 | 
			
		||||
static int intone = 1;
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#define SCALAR        float
 | 
			
		||||
#define SCALAR_PREFIX s
 | 
			
		||||
#include "blas_interface_impl.hh"
 | 
			
		||||
#undef SCALAR
 | 
			
		||||
#undef SCALAR_PREFIX
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#define SCALAR        double
 | 
			
		||||
#define SCALAR_PREFIX d
 | 
			
		||||
#include "blas_interface_impl.hh"
 | 
			
		||||
#undef SCALAR
 | 
			
		||||
#undef SCALAR_PREFIX
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										147
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/blas_interface_impl.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										147
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/blas_interface_impl.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,147 @@
 | 
			
		||||
 | 
			
		||||
#define BLAS_FUNC(NAME) CAT(CAT(SCALAR_PREFIX,NAME),_)
 | 
			
		||||
 | 
			
		||||
template<> class blas_interface<SCALAR> : public c_interface_base<SCALAR>
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
  
 | 
			
		||||
  static SCALAR fone;
 | 
			
		||||
  static SCALAR fzero;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name()
 | 
			
		||||
  {
 | 
			
		||||
    return MAKE_STRING(CBLASNAME);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    BLAS_FUNC(gemv)(¬rans,&N,&N,&fone,A,&N,B,&intone,&fzero,X,&intone);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void symv(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    BLAS_FUNC(symv)(&lower, &N,&fone,A,&N,B,&intone,&fzero,X,&intone);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void syr2(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    BLAS_FUNC(syr2)(&lower,&N,&fone,B,&intone,X,&intone,A,&N);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void ger(gene_matrix & A, gene_vector & X, gene_vector & Y, int N){
 | 
			
		||||
    BLAS_FUNC(ger)(&N,&N,&fone,X,&intone,Y,&intone,A,&N);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void rot(gene_vector & A,  gene_vector & B, SCALAR c, SCALAR s, int N){
 | 
			
		||||
    BLAS_FUNC(rot)(&N,A,&intone,B,&intone,&c,&s);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    BLAS_FUNC(gemv)(&trans,&N,&N,&fone,A,&N,B,&intone,&fzero,X,&intone);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(gene_matrix & A, gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    BLAS_FUNC(gemm)(¬rans,¬rans,&N,&N,&N,&fone,A,&N,B,&N,&fzero,X,&N);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void transposed_matrix_matrix_product(gene_matrix & A, gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    BLAS_FUNC(gemm)(¬rans,¬rans,&N,&N,&N,&fone,A,&N,B,&N,&fzero,X,&N);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
//   static inline void ata_product(gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
//     ssyrk_(&lower,&trans,&N,&N,&fone,A,&N,&fzero,X,&N);
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
  static inline void aat_product(gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
    BLAS_FUNC(syrk)(&lower,¬rans,&N,&N,&fone,A,&N,&fzero,X,&N);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(SCALAR coef, const gene_vector & X, gene_vector & Y, int N){
 | 
			
		||||
    BLAS_FUNC(axpy)(&N,&coef,X,&intone,Y,&intone);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpby(SCALAR a, const gene_vector & X, SCALAR b, gene_vector & Y, int N){
 | 
			
		||||
    BLAS_FUNC(scal)(&N,&b,Y,&intone);
 | 
			
		||||
    BLAS_FUNC(axpy)(&N,&a,X,&intone,Y,&intone);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void cholesky(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    int N2 = N*N;
 | 
			
		||||
    BLAS_FUNC(copy)(&N2, X, &intone, C, &intone);
 | 
			
		||||
    char uplo = 'L';
 | 
			
		||||
    int info = 0;
 | 
			
		||||
    BLAS_FUNC(potrf)(&uplo, &N, C, &N, &info);
 | 
			
		||||
    if(info!=0) std::cerr << "potrf_ error " << info << "\n";
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void partial_lu_decomp(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    int N2 = N*N;
 | 
			
		||||
    BLAS_FUNC(copy)(&N2, X, &intone, C, &intone);
 | 
			
		||||
    int info = 0;
 | 
			
		||||
    int * ipiv = (int*)alloca(sizeof(int)*N);
 | 
			
		||||
    BLAS_FUNC(getrf)(&N, &N, C, &N, ipiv, &info);
 | 
			
		||||
    if(info!=0) std::cerr << "getrf_ error " << info << "\n";
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
  static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector & X, int N){
 | 
			
		||||
    BLAS_FUNC(copy)(&N, B, &intone, X, &intone);
 | 
			
		||||
    BLAS_FUNC(trsv)(&lower, ¬rans, &nonunit, &N, L, &N, X, &intone);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trisolve_lower_matrix(const gene_matrix & L, const gene_matrix& B, gene_matrix & X, int N){
 | 
			
		||||
    BLAS_FUNC(copy)(&N, B, &intone, X, &intone);
 | 
			
		||||
    BLAS_FUNC(trsm)(&right, &lower, ¬rans, &nonunit, &N, &N, &fone, L, &N, X, &N);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trmm(gene_matrix & A, gene_matrix & B, gene_matrix & /*X*/, int N){
 | 
			
		||||
    BLAS_FUNC(trmm)(&left, &lower, ¬rans,&nonunit, &N,&N,&fone,A,&N,B,&N);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  #ifdef HAS_LAPACK
 | 
			
		||||
 | 
			
		||||
  static inline void lu_decomp(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    int N2 = N*N;
 | 
			
		||||
    BLAS_FUNC(copy)(&N2, X, &intone, C, &intone);
 | 
			
		||||
    int info = 0;
 | 
			
		||||
    int * ipiv = (int*)alloca(sizeof(int)*N);
 | 
			
		||||
    int * jpiv = (int*)alloca(sizeof(int)*N);
 | 
			
		||||
    BLAS_FUNC(getc2)(&N, C, &N, ipiv, jpiv, &info);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline void hessenberg(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    {
 | 
			
		||||
      int N2 = N*N;
 | 
			
		||||
      int inc = 1;
 | 
			
		||||
      BLAS_FUNC(copy)(&N2, X, &inc, C, &inc);
 | 
			
		||||
    }
 | 
			
		||||
    int info = 0;
 | 
			
		||||
    int ilo = 1;
 | 
			
		||||
    int ihi = N;
 | 
			
		||||
    int bsize = 64;
 | 
			
		||||
    int worksize = N*bsize;
 | 
			
		||||
    SCALAR* d = new SCALAR[N+worksize];
 | 
			
		||||
    BLAS_FUNC(gehrd)(&N, &ilo, &ihi, C, &N, d, d+N, &worksize, &info);
 | 
			
		||||
    delete[] d;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void tridiagonalization(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    {
 | 
			
		||||
      int N2 = N*N;
 | 
			
		||||
      int inc = 1;
 | 
			
		||||
      BLAS_FUNC(copy)(&N2, X, &inc, C, &inc);
 | 
			
		||||
    }
 | 
			
		||||
    char uplo = 'U';
 | 
			
		||||
    int info = 0;
 | 
			
		||||
    int bsize = 64;
 | 
			
		||||
    int worksize = N*bsize;
 | 
			
		||||
    SCALAR* d = new SCALAR[3*N+worksize];
 | 
			
		||||
    BLAS_FUNC(sytrd)(&uplo, &N, C, &N, d, d+N, d+2*N, d+3*N, &worksize, &info);
 | 
			
		||||
    delete[] d;
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
  #endif // HAS_LAPACK
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
SCALAR blas_interface<SCALAR>::fone = SCALAR(1);
 | 
			
		||||
SCALAR blas_interface<SCALAR>::fzero = SCALAR(0);
 | 
			
		||||
							
								
								
									
										73
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/c_interface_base.h
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										73
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/c_interface_base.h
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,73 @@
 | 
			
		||||
 | 
			
		||||
#ifndef BTL_C_INTERFACE_BASE_H
 | 
			
		||||
#define BTL_C_INTERFACE_BASE_H
 | 
			
		||||
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
template<class real> class c_interface_base
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public:
 | 
			
		||||
 | 
			
		||||
  typedef real                      real_type;
 | 
			
		||||
  typedef std::vector<real>         stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector >  stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef real* gene_matrix;
 | 
			
		||||
  typedef real* gene_vector;
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & A, int /*N*/){
 | 
			
		||||
    delete[] A;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & B){
 | 
			
		||||
    delete[] B;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int N = A_stl.size();
 | 
			
		||||
    A = new real[N*N];
 | 
			
		||||
    for (int j=0;j<N;j++)
 | 
			
		||||
      for (int i=0;i<N;i++)
 | 
			
		||||
        A[i+N*j] = A_stl[j][i];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    int N = B_stl.size();
 | 
			
		||||
    B = new real[N];
 | 
			
		||||
    for (int i=0;i<N;i++)
 | 
			
		||||
      B[i] = B_stl[i];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    int N = B_stl.size();
 | 
			
		||||
    for (int i=0;i<N;i++)
 | 
			
		||||
      B_stl[i] = B[i];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int N = A_stl.size();
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      A_stl[j].resize(N);
 | 
			
		||||
      for (int i=0;i<N;i++)
 | 
			
		||||
        A_stl[j][i] = A[i+N*j];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
 | 
			
		||||
    for (int i=0;i<N;i++)
 | 
			
		||||
      cible[i]=source[i];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      for (int i=0;i<N;i++){
 | 
			
		||||
        cible[i+N*j] = source[i+N*j];
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										73
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/main.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										73
									
								
								cs440-acg/ext/eigen/bench/btl/libs/BLAS/main.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,73 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  main.cpp
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:28 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "blas_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
#include "action_cholesky.hh"
 | 
			
		||||
#include "action_lu_decomp.hh"
 | 
			
		||||
#include "action_partial_lu.hh"
 | 
			
		||||
#include "action_trisolve_matrix.hh"
 | 
			
		||||
 | 
			
		||||
#ifdef HAS_LAPACK
 | 
			
		||||
#include "action_hessenberg.hh"
 | 
			
		||||
#endif
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench<Action_axpy<blas_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_axpby<blas_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_matrix_vector_product<blas_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_atv_product<blas_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_symv<blas_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_syr2<blas_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_ger<blas_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_rot<blas_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_matrix_matrix_product<blas_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_ata_product<blas_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_aat_product<blas_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_trisolve<blas_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_trisolve_matrix<blas_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_trmm<blas_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_cholesky<blas_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
  bench<Action_partial_lu<blas_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  #ifdef HAS_LAPACK
 | 
			
		||||
//   bench<Action_lu_decomp<blas_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
  bench<Action_hessenberg<blas_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
  bench<Action_tridiagonalization<blas_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
  #endif
 | 
			
		||||
 | 
			
		||||
  //bench<Action_lu_solve<blas_LU_solve_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										2
									
								
								cs440-acg/ext/eigen/bench/btl/libs/STL/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										2
									
								
								cs440-acg/ext/eigen/bench/btl/libs/STL/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,2 @@
 | 
			
		||||
 | 
			
		||||
btl_add_bench(btl_STL main.cpp OFF)
 | 
			
		||||
							
								
								
									
										244
									
								
								cs440-acg/ext/eigen/bench/btl/libs/STL/STL_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										244
									
								
								cs440-acg/ext/eigen/bench/btl/libs/STL/STL_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,244 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  STL_interface.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:24 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef STL_INTERFACE_HH
 | 
			
		||||
#define STL_INTERFACE_HH
 | 
			
		||||
#include <string>
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
 | 
			
		||||
using namespace std;
 | 
			
		||||
 | 
			
		||||
template<class real>
 | 
			
		||||
class STL_interface{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef real real_type ;
 | 
			
		||||
 | 
			
		||||
  typedef std::vector<real>  stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector > stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef stl_matrix gene_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef stl_vector gene_vector;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "STL";
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & /*A*/, int /*N*/){}
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & /*B*/){}
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    A = A_stl;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B = B_stl;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B_stl = B ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    A_stl = A ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
 | 
			
		||||
    for (int i=0;i<N;i++){
 | 
			
		||||
      cible[i]=source[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
 | 
			
		||||
    for (int i=0;i<N;i++)
 | 
			
		||||
      for (int j=0;j<N;j++)
 | 
			
		||||
        cible[i][j]=source[i][j];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
//   static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N)
 | 
			
		||||
//   {
 | 
			
		||||
//     real somme;
 | 
			
		||||
//     for (int j=0;j<N;j++){
 | 
			
		||||
//       for (int i=0;i<N;i++){
 | 
			
		||||
//         somme=0.0;
 | 
			
		||||
//         for (int k=0;k<N;k++)
 | 
			
		||||
//           somme += A[i][k]*A[j][k];
 | 
			
		||||
//         X[j][i]=somme;
 | 
			
		||||
//       }
 | 
			
		||||
//     }
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
  static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    real somme;
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      for (int i=0;i<N;i++){
 | 
			
		||||
        somme=0.0;
 | 
			
		||||
        if(i>=j)
 | 
			
		||||
        {
 | 
			
		||||
          for (int k=0;k<N;k++){
 | 
			
		||||
            somme+=A[k][i]*A[k][j];
 | 
			
		||||
          }
 | 
			
		||||
          X[j][i]=somme;
 | 
			
		||||
        }
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    real somme;
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      for (int i=0;i<N;i++){
 | 
			
		||||
        somme=0.0;
 | 
			
		||||
        for (int k=0;k<N;k++)
 | 
			
		||||
          somme+=A[k][i]*B[j][k];
 | 
			
		||||
        X[j][i]=somme;
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    real somme;
 | 
			
		||||
    for (int i=0;i<N;i++){
 | 
			
		||||
      somme=0.0;
 | 
			
		||||
      for (int j=0;j<N;j++)
 | 
			
		||||
        somme+=A[j][i]*B[j];
 | 
			
		||||
      X[i]=somme;
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void symv(gene_matrix & A, gene_vector & B, gene_vector & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    for (int j=0; j<N; ++j)
 | 
			
		||||
      X[j] = 0;
 | 
			
		||||
    for (int j=0; j<N; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      real t1 = B[j];
 | 
			
		||||
      real t2 = 0;
 | 
			
		||||
      X[j] += t1 * A[j][j];
 | 
			
		||||
      for (int i=j+1; i<N; ++i) {
 | 
			
		||||
        X[i] += t1 * A[j][i];
 | 
			
		||||
        t2 += A[j][i] * B[i];
 | 
			
		||||
      }
 | 
			
		||||
      X[j] += t2;
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
  
 | 
			
		||||
  static inline void syr2(gene_matrix & A, gene_vector & B, gene_vector & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    for (int j=0; j<N; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      for (int i=j; i<N; ++i)
 | 
			
		||||
        A[j][i] += B[i]*X[j] + B[j]*X[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void ger(gene_matrix & A, gene_vector & X, gene_vector & Y, int N)
 | 
			
		||||
  {
 | 
			
		||||
    for (int j=0; j<N; ++j)
 | 
			
		||||
    {
 | 
			
		||||
      for (int i=j; i<N; ++i)
 | 
			
		||||
        A[j][i] += X[i]*Y[j];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    real somme;
 | 
			
		||||
    for (int i=0;i<N;i++){
 | 
			
		||||
      somme = 0.0;
 | 
			
		||||
      for (int j=0;j<N;j++)
 | 
			
		||||
        somme += A[i][j]*B[j];
 | 
			
		||||
      X[i] = somme;
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(real coef, const gene_vector & X, gene_vector & Y, int N){
 | 
			
		||||
    for (int i=0;i<N;i++)
 | 
			
		||||
      Y[i]+=coef*X[i];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpby(real a, const gene_vector & X, real b, gene_vector & Y, int N){
 | 
			
		||||
    for (int i=0;i<N;i++)
 | 
			
		||||
      Y[i] = a*X[i] + b*Y[i];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trisolve_lower(const gene_matrix & L, const gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    copy_vector(B,X,N);
 | 
			
		||||
    for(int i=0; i<N; ++i)
 | 
			
		||||
    {
 | 
			
		||||
      X[i] /= L[i][i];
 | 
			
		||||
      real tmp = X[i];
 | 
			
		||||
      for (int j=i+1; j<N; ++j)
 | 
			
		||||
        X[j] -= tmp * L[i][j];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline real norm_diff(const stl_vector & A, const stl_vector & B)
 | 
			
		||||
  {
 | 
			
		||||
    int N=A.size();
 | 
			
		||||
    real somme=0.0;
 | 
			
		||||
    real somme2=0.0;
 | 
			
		||||
 | 
			
		||||
    for (int i=0;i<N;i++){
 | 
			
		||||
      real diff=A[i]-B[i];
 | 
			
		||||
      somme+=diff*diff;
 | 
			
		||||
      somme2+=A[i]*A[i];
 | 
			
		||||
    }
 | 
			
		||||
    return somme/somme2;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline real norm_diff(const stl_matrix & A, const stl_matrix & B)
 | 
			
		||||
  {
 | 
			
		||||
    int N=A[0].size();
 | 
			
		||||
    real somme=0.0;
 | 
			
		||||
    real somme2=0.0;
 | 
			
		||||
 | 
			
		||||
    for (int i=0;i<N;i++){
 | 
			
		||||
      for (int j=0;j<N;j++){
 | 
			
		||||
        real diff=A[i][j] - B[i][j];
 | 
			
		||||
        somme += diff*diff;
 | 
			
		||||
        somme2 += A[i][j]*A[i][j];
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    return somme/somme2;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void display_vector(const stl_vector & A)
 | 
			
		||||
  {
 | 
			
		||||
    int N=A.size();
 | 
			
		||||
    for (int i=0;i<N;i++){
 | 
			
		||||
      INFOS("A["<<i<<"]="<<A[i]<<endl);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										42
									
								
								cs440-acg/ext/eigen/bench/btl/libs/STL/main.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										42
									
								
								cs440-acg/ext/eigen/bench/btl/libs/STL/main.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,42 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  main.cpp
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:23 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "STL_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench<Action_axpy<STL_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_axpby<STL_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_matrix_vector_product<STL_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_atv_product<STL_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_symv<STL_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_syr2<STL_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_matrix_matrix_product<STL_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_ata_product<STL_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_aat_product<STL_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										13
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blaze/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										13
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blaze/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,13 @@
 | 
			
		||||
 | 
			
		||||
find_package(BLAZE)
 | 
			
		||||
find_package(Boost COMPONENTS system)
 | 
			
		||||
if (BLAZE_FOUND AND Boost_FOUND)
 | 
			
		||||
  include_directories(${BLAZE_INCLUDE_DIR} ${Boost_INCLUDE_DIRS})
 | 
			
		||||
  btl_add_bench(btl_blaze main.cpp)
 | 
			
		||||
  # Note: The newest blaze version requires C++14.
 | 
			
		||||
  # Ideally, we should set this depending on the version of Blaze we found
 | 
			
		||||
  set_property(TARGET btl_blaze PROPERTY CXX_STANDARD 14)
 | 
			
		||||
  if(BUILD_btl_blaze)
 | 
			
		||||
    target_link_libraries(btl_blaze ${Boost_LIBRARIES})
 | 
			
		||||
  endif()
 | 
			
		||||
endif ()
 | 
			
		||||
							
								
								
									
										140
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blaze/blaze_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										140
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blaze/blaze_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,140 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef BLAZE_INTERFACE_HH
 | 
			
		||||
#define BLAZE_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include <blaze/Math.h>
 | 
			
		||||
#include <blaze/Blaze.h>
 | 
			
		||||
// using namespace blaze;
 | 
			
		||||
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
template<class real>
 | 
			
		||||
class blaze_interface {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef real real_type ;
 | 
			
		||||
 | 
			
		||||
  typedef std::vector<real>        stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector > stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef blaze::DynamicMatrix<real,blaze::columnMajor>  gene_matrix;
 | 
			
		||||
  typedef blaze::DynamicVector<real>  gene_vector;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name() { return "blaze"; }
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & A, int N){
 | 
			
		||||
    return ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & B){
 | 
			
		||||
    return ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    A.resize(A_stl[0].size(), A_stl.size());
 | 
			
		||||
 | 
			
		||||
    for (int j=0; j<A_stl.size() ; j++){
 | 
			
		||||
      for (int i=0; i<A_stl[j].size() ; i++){
 | 
			
		||||
        A(i,j) = A_stl[j][i];
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B.resize(B_stl.size());
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B[i] = B_stl[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B_stl[i] = B[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int N=A_stl.size();
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      A_stl[j].resize(N);
 | 
			
		||||
      for (int i=0;i<N;i++){
 | 
			
		||||
        A_stl[j][i] = A(i,j);
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    X = (A*B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void transposed_matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    X = (trans(A)*trans(B));
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
    X = (trans(A)*A);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
    X = (A*trans(A));
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    X = (A*B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    X = (trans(A)*B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(const real coef, const gene_vector & X, gene_vector & Y, int N){
 | 
			
		||||
    Y += coef * X;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpby(real a, const gene_vector & X, real b, gene_vector & Y, int N){
 | 
			
		||||
    Y = a*X + b*Y;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
//   static inline void cholesky(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
//     C = X;
 | 
			
		||||
//     recursive_cholesky(C);
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
//   static inline void lu_decomp(const gene_matrix & X, gene_matrix & R, int N){
 | 
			
		||||
//     R = X;
 | 
			
		||||
//     std::vector<int> ipvt(N);
 | 
			
		||||
//     lu_factor(R, ipvt);
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
//   static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector & X, int N){
 | 
			
		||||
//     X = lower_trisolve(L, B);
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										40
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blaze/main.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										40
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blaze/main.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,40 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "blaze_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench<Action_axpy<blaze_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_axpby<blaze_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_matrix_vector_product<blaze_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_atv_product<blaze_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
//   bench<Action_matrix_matrix_product<blaze_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_ata_product<blaze_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_aat_product<blaze_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										17
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										17
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,17 @@
 | 
			
		||||
 | 
			
		||||
find_package(Blitz)
 | 
			
		||||
 | 
			
		||||
if (BLITZ_FOUND)
 | 
			
		||||
  include_directories(${BLITZ_INCLUDES})
 | 
			
		||||
 | 
			
		||||
  btl_add_bench(btl_blitz btl_blitz.cpp)
 | 
			
		||||
  if (BUILD_btl_blitz)
 | 
			
		||||
    target_link_libraries(btl_blitz ${BLITZ_LIBRARIES})
 | 
			
		||||
  endif (BUILD_btl_blitz)
 | 
			
		||||
 | 
			
		||||
  btl_add_bench(btl_tiny_blitz btl_tiny_blitz.cpp OFF)
 | 
			
		||||
  if (BUILD_btl_tiny_blitz)
 | 
			
		||||
    target_link_libraries(btl_tiny_blitz ${BLITZ_LIBRARIES})
 | 
			
		||||
  endif (BUILD_btl_tiny_blitz)
 | 
			
		||||
 | 
			
		||||
endif (BLITZ_FOUND)
 | 
			
		||||
@@ -0,0 +1,192 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  blitz_LU_solve_interface.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:31 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef BLITZ_LU_SOLVE_INTERFACE_HH
 | 
			
		||||
#define BLITZ_LU_SOLVE_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include "blitz/array.h"
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
BZ_USING_NAMESPACE(blitz)
 | 
			
		||||
 | 
			
		||||
template<class real>
 | 
			
		||||
class blitz_LU_solve_interface : public blitz_interface<real>
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef typename blitz_interface<real>::gene_matrix gene_matrix;
 | 
			
		||||
  typedef typename blitz_interface<real>::gene_vector gene_vector;
 | 
			
		||||
 | 
			
		||||
  typedef blitz::Array<int,1> Pivot_Vector;
 | 
			
		||||
 | 
			
		||||
  inline static void new_Pivot_Vector(Pivot_Vector & pivot,int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    pivot.resize(N);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void free_Pivot_Vector(Pivot_Vector & pivot)
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    return;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline real matrix_vector_product_sliced(const gene_matrix & A, gene_vector B, int row, int col_start, int col_end)
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    real somme=0.;
 | 
			
		||||
    
 | 
			
		||||
    for (int j=col_start ; j<col_end+1 ; j++){
 | 
			
		||||
	
 | 
			
		||||
	somme+=A(row,j)*B(j);
 | 
			
		||||
	
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    return somme;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline real matrix_matrix_product_sliced(gene_matrix & A, int row, int col_start, int col_end, gene_matrix & B, int row_shift, int col )
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    real somme=0.;
 | 
			
		||||
    
 | 
			
		||||
    for (int j=col_start ; j<col_end+1 ; j++){
 | 
			
		||||
	
 | 
			
		||||
	somme+=A(row,j)*B(j+row_shift,col);
 | 
			
		||||
	
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    return somme;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void LU_factor(gene_matrix & LU, Pivot_Vector & pivot, int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    ASSERT( LU.rows()==LU.cols() ) ;
 | 
			
		||||
    int index_max = 0 ;
 | 
			
		||||
    real big = 0. ;
 | 
			
		||||
    real theSum = 0. ;
 | 
			
		||||
    real dum = 0. ;
 | 
			
		||||
    // Get the implicit scaling information :
 | 
			
		||||
    gene_vector ImplicitScaling( N ) ;
 | 
			
		||||
    for( int i=0; i<N; i++ ) {
 | 
			
		||||
      big = 0. ;
 | 
			
		||||
      for( int j=0; j<N; j++ ) {
 | 
			
		||||
	if( abs( LU( i, j ) )>=big ) big = abs( LU( i, j ) ) ;
 | 
			
		||||
      }
 | 
			
		||||
      if( big==0. ) {
 | 
			
		||||
	INFOS( "blitz_LU_factor::Singular matrix" ) ;
 | 
			
		||||
	exit( 0 ) ;
 | 
			
		||||
      }
 | 
			
		||||
      ImplicitScaling( i ) = 1./big ;
 | 
			
		||||
    }
 | 
			
		||||
    // Loop over columns of Crout's method :
 | 
			
		||||
    for( int j=0; j<N; j++ ) {
 | 
			
		||||
      for( int i=0; i<j; i++ ) {
 | 
			
		||||
	theSum = LU( i, j ) ;
 | 
			
		||||
	theSum -= matrix_matrix_product_sliced(LU, i, 0, i-1, LU, 0, j) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( fromStart, i-1 ) )*LU( Range( fromStart, i-1 ), j ) ) ;
 | 
			
		||||
	LU( i, j ) = theSum ;
 | 
			
		||||
      }
 | 
			
		||||
      
 | 
			
		||||
      // Search for the largest pivot element :
 | 
			
		||||
      big = 0. ;
 | 
			
		||||
      for( int i=j; i<N; i++ ) {
 | 
			
		||||
	theSum = LU( i, j ) ;
 | 
			
		||||
	theSum -= matrix_matrix_product_sliced(LU, i, 0, j-1, LU, 0, j) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( fromStart, j-1 ) )*LU( Range( fromStart, j-1 ), j ) ) ;
 | 
			
		||||
	LU( i, j ) = theSum ;
 | 
			
		||||
	if( (ImplicitScaling( i )*abs( theSum ))>=big ) {
 | 
			
		||||
	  dum = ImplicitScaling( i )*abs( theSum ) ;
 | 
			
		||||
	  big = dum ;
 | 
			
		||||
	  index_max = i ;
 | 
			
		||||
	}
 | 
			
		||||
      }
 | 
			
		||||
      // Interchanging rows and the scale factor :
 | 
			
		||||
      if( j!=index_max ) {
 | 
			
		||||
	for( int k=0; k<N; k++ ) {
 | 
			
		||||
	  dum = LU( index_max, k ) ;
 | 
			
		||||
	  LU( index_max, k ) = LU( j, k ) ;
 | 
			
		||||
	  LU( j, k ) = dum ;
 | 
			
		||||
	}
 | 
			
		||||
	ImplicitScaling( index_max ) = ImplicitScaling( j ) ;
 | 
			
		||||
      }
 | 
			
		||||
      pivot( j ) = index_max ;
 | 
			
		||||
      if ( LU( j, j )==0. ) LU( j, j ) = 1.e-20 ;
 | 
			
		||||
      // Divide by the pivot element :
 | 
			
		||||
      if( j<N ) {
 | 
			
		||||
	dum = 1./LU( j, j ) ;
 | 
			
		||||
	for( int i=j+1; i<N; i++ ) LU( i, j ) *= dum ;
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void LU_solve(const gene_matrix & LU, const Pivot_Vector pivot, gene_vector &B, gene_vector X, int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    // Pour conserver le meme header, on travaille sur X, copie du second-membre B
 | 
			
		||||
    X = B.copy() ;
 | 
			
		||||
    ASSERT( LU.rows()==LU.cols() ) ;
 | 
			
		||||
    firstIndex indI ;
 | 
			
		||||
    // Forward substitution :
 | 
			
		||||
    int ii = 0 ;
 | 
			
		||||
    real theSum = 0. ;
 | 
			
		||||
    for( int i=0; i<N; i++ ) {
 | 
			
		||||
      int ip = pivot( i ) ;
 | 
			
		||||
      theSum = X( ip ) ;
 | 
			
		||||
      //      theSum = B( ip ) ;
 | 
			
		||||
      X( ip ) = X( i ) ;
 | 
			
		||||
      //      B( ip ) = B( i ) ;
 | 
			
		||||
      if( ii ) {
 | 
			
		||||
	theSum -= matrix_vector_product_sliced(LU, X, i, ii-1, i-1) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( ii-1, i-1 ) )*X( Range( ii-1, i-1 ) ) ) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( ii-1, i-1 ) )*B( Range( ii-1, i-1 ) ) ) ;
 | 
			
		||||
      } else if( theSum ) {
 | 
			
		||||
	ii = i+1 ;
 | 
			
		||||
      }
 | 
			
		||||
      X( i ) = theSum ;
 | 
			
		||||
      //      B( i ) = theSum ;
 | 
			
		||||
    }
 | 
			
		||||
    // Backsubstitution :
 | 
			
		||||
    for( int i=N-1; i>=0; i-- ) {
 | 
			
		||||
      theSum = X( i ) ;
 | 
			
		||||
      //      theSum = B( i ) ;
 | 
			
		||||
      theSum -= matrix_vector_product_sliced(LU, X, i, i+1, N) ;
 | 
			
		||||
      //      theSum -= sum( LU( i, Range( i+1, toEnd ) )*X( Range( i+1, toEnd ) ) ) ;
 | 
			
		||||
      //      theSum -= sum( LU( i, Range( i+1, toEnd ) )*B( Range( i+1, toEnd ) ) ) ;
 | 
			
		||||
      // Store a component of the solution vector :
 | 
			
		||||
      X( i ) = theSum/LU( i, i ) ;
 | 
			
		||||
      //      B( i ) = theSum/LU( i, i ) ;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										147
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/blitz_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										147
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/blitz_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,147 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  blitz_interface.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:30 CEST 2002
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef BLITZ_INTERFACE_HH
 | 
			
		||||
#define BLITZ_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include <blitz/blitz.h>
 | 
			
		||||
#include <blitz/array.h>
 | 
			
		||||
#include <blitz/vector-et.h>
 | 
			
		||||
#include <blitz/vecwhere.h>
 | 
			
		||||
#include <blitz/matrix.h>
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
BZ_USING_NAMESPACE(blitz)
 | 
			
		||||
 | 
			
		||||
template<class real>
 | 
			
		||||
class blitz_interface{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef real real_type ;
 | 
			
		||||
 | 
			
		||||
  typedef std::vector<real>  stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector > stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef blitz::Array<real, 2>  gene_matrix;
 | 
			
		||||
  typedef blitz::Array<real, 1>  gene_vector;
 | 
			
		||||
//   typedef blitz::Matrix<real, blitz::ColumnMajor>  gene_matrix;
 | 
			
		||||
//   typedef blitz::Vector<real> gene_vector;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name() { return "blitz"; }
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & A, int N){}
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & B){}
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    A.resize(A_stl[0].size(),A_stl.size());
 | 
			
		||||
    for (int j=0; j<A_stl.size() ; j++){
 | 
			
		||||
      for (int i=0; i<A_stl[j].size() ; i++){
 | 
			
		||||
        A(i,j)=A_stl[j][i];
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B.resize(B_stl.size());
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B(i)=B_stl[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B_stl[i]=B(i);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int N=A_stl.size();
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      A_stl[j].resize(N);
 | 
			
		||||
      for (int i=0;i<N;i++)
 | 
			
		||||
        A_stl[j][i] = A(i,j);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    firstIndex i;
 | 
			
		||||
    secondIndex j;
 | 
			
		||||
    thirdIndex k;
 | 
			
		||||
    X = sum(A(i,k) * B(k,j), k);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    firstIndex i;
 | 
			
		||||
    secondIndex j;
 | 
			
		||||
    thirdIndex k;
 | 
			
		||||
    X = sum(A(k,i) * A(k,j), k);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    firstIndex i;
 | 
			
		||||
    secondIndex j;
 | 
			
		||||
    thirdIndex k;
 | 
			
		||||
    X = sum(A(i,k) * A(j,k), k);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    firstIndex i;
 | 
			
		||||
    secondIndex j;
 | 
			
		||||
    X = sum(A(i,j)*B(j),j);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N)
 | 
			
		||||
  {
 | 
			
		||||
    firstIndex i;
 | 
			
		||||
    secondIndex j;
 | 
			
		||||
    X = sum(A(j,i) * B(j),j);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(const real coef, const gene_vector & X, gene_vector & Y, int N)
 | 
			
		||||
  {
 | 
			
		||||
    firstIndex i;
 | 
			
		||||
    Y = Y(i) + coef * X(i);
 | 
			
		||||
    //Y += coef * X;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
 | 
			
		||||
    cible = source;
 | 
			
		||||
    //cible.template operator=<gene_matrix>(source);
 | 
			
		||||
//     for (int i=0;i<N;i++){
 | 
			
		||||
//       for (int j=0;j<N;j++){
 | 
			
		||||
//         cible(i,j)=source(i,j);
 | 
			
		||||
//       }
 | 
			
		||||
//     }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
 | 
			
		||||
    //cible.template operator=<gene_vector>(source);
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										51
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/btl_blitz.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										51
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/btl_blitz.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,51 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  main.cpp
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:30 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "blitz_interface.hh"
 | 
			
		||||
#include "blitz_LU_solve_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "action_matrix_vector_product.hh"
 | 
			
		||||
#include "action_matrix_matrix_product.hh"
 | 
			
		||||
#include "action_axpy.hh"
 | 
			
		||||
#include "action_lu_solve.hh"
 | 
			
		||||
#include "action_ata_product.hh"
 | 
			
		||||
#include "action_aat_product.hh"
 | 
			
		||||
#include "action_atv_product.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench<Action_matrix_vector_product<blitz_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_atv_product<blitz_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_matrix_matrix_product<blitz_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_ata_product<blitz_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_aat_product<blitz_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_axpy<blitz_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  //bench<Action_lu_solve<blitz_LU_solve_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										38
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/btl_tiny_blitz.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										38
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/btl_tiny_blitz.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,38 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  main.cpp
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:30 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "tiny_blitz_interface.hh"
 | 
			
		||||
#include "static/bench_static.hh"
 | 
			
		||||
#include "action_matrix_vector_product.hh"
 | 
			
		||||
#include "action_matrix_matrix_product.hh"
 | 
			
		||||
#include "action_axpy.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench_static<Action_axpy,tiny_blitz_interface>();
 | 
			
		||||
  bench_static<Action_matrix_matrix_product,tiny_blitz_interface>();
 | 
			
		||||
  bench_static<Action_matrix_vector_product,tiny_blitz_interface>();
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										106
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/tiny_blitz_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										106
									
								
								cs440-acg/ext/eigen/bench/btl/libs/blitz/tiny_blitz_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,106 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  tiny_blitz_interface.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:30 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef TINY_BLITZ_INTERFACE_HH
 | 
			
		||||
#define TINY_BLITZ_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include "blitz/array.h"
 | 
			
		||||
#include "blitz/tiny.h"
 | 
			
		||||
#include "blitz/tinymat.h"
 | 
			
		||||
#include "blitz/tinyvec.h"
 | 
			
		||||
#include <blitz/tinyvec-et.h>
 | 
			
		||||
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
BZ_USING_NAMESPACE(blitz)
 | 
			
		||||
 | 
			
		||||
template<class real, int SIZE>
 | 
			
		||||
class tiny_blitz_interface
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef real real_type ;
 | 
			
		||||
 | 
			
		||||
  typedef std::vector<real>  stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector > stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef TinyVector<real,SIZE> gene_vector;
 | 
			
		||||
  typedef TinyMatrix<real,SIZE,SIZE> gene_matrix;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name() { return "tiny_blitz"; }
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & A, int N){}
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & B){}
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    for (int j=0; j<A_stl.size() ; j++)
 | 
			
		||||
      for (int i=0; i<A_stl[j].size() ; i++)
 | 
			
		||||
        A(i,j)=A_stl[j][i];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++)
 | 
			
		||||
      B(i) = B_stl[i];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++)
 | 
			
		||||
      B_stl[i] = B(i);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int N = A_stl.size();
 | 
			
		||||
    for (int j=0;j<N;j++)
 | 
			
		||||
    {
 | 
			
		||||
      A_stl[j].resize(N);
 | 
			
		||||
      for (int i=0;i<N;i++)
 | 
			
		||||
        A_stl[j][i] = A(i,j);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
 | 
			
		||||
    for (int j=0;j<N;j++)
 | 
			
		||||
      for (int i=0;i<N;i++)
 | 
			
		||||
        cible(i,j) = source(i,j);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
 | 
			
		||||
    for (int i=0;i<N;i++){
 | 
			
		||||
      cible(i) = source(i);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    X = product(A,B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    X = product(A,B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(const real coef, const gene_vector & X, gene_vector & Y, int N){
 | 
			
		||||
    Y += coef * X;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										19
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										19
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,19 @@
 | 
			
		||||
 | 
			
		||||
find_package(Eigen2)
 | 
			
		||||
 | 
			
		||||
if(EIGEN2_FOUND)
 | 
			
		||||
 | 
			
		||||
  include_directories(BEFORE ${EIGEN2_INCLUDE_DIR})
 | 
			
		||||
  btl_add_bench(btl_eigen2_linear main_linear.cpp)
 | 
			
		||||
  btl_add_bench(btl_eigen2_vecmat main_vecmat.cpp)
 | 
			
		||||
  btl_add_bench(btl_eigen2_matmat main_matmat.cpp)
 | 
			
		||||
  btl_add_bench(btl_eigen2_adv main_adv.cpp      )
 | 
			
		||||
 | 
			
		||||
  btl_add_target_property(btl_eigen2_linear COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=eigen2")
 | 
			
		||||
  btl_add_target_property(btl_eigen2_vecmat COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=eigen2")
 | 
			
		||||
  btl_add_target_property(btl_eigen2_matmat COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=eigen2")
 | 
			
		||||
  btl_add_target_property(btl_eigen2_adv    COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=eigen2")
 | 
			
		||||
 | 
			
		||||
  btl_add_bench(btl_tiny_eigen2 btl_tiny_eigen2.cpp OFF)
 | 
			
		||||
 | 
			
		||||
endif() # EIGEN2_FOUND
 | 
			
		||||
@@ -0,0 +1,46 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen3_interface.hh"
 | 
			
		||||
#include "static/bench_static.hh"
 | 
			
		||||
#include "action_matrix_vector_product.hh"
 | 
			
		||||
#include "action_matrix_matrix_product.hh"
 | 
			
		||||
#include "action_axpy.hh"
 | 
			
		||||
#include "action_lu_solve.hh"
 | 
			
		||||
#include "action_ata_product.hh"
 | 
			
		||||
#include "action_aat_product.hh"
 | 
			
		||||
#include "action_atv_product.hh"
 | 
			
		||||
#include "action_cholesky.hh"
 | 
			
		||||
#include "action_trisolve.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench_static<Action_axpy,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_matrix_matrix_product,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_matrix_vector_product,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_atv_product,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_cholesky,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_trisolve,eigen2_interface>();
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										168
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/eigen2_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										168
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/eigen2_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,168 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <g.gael@free.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef EIGEN2_INTERFACE_HH
 | 
			
		||||
#define EIGEN2_INTERFACE_HH
 | 
			
		||||
// #include <cblas.h>
 | 
			
		||||
#include <Eigen/Core>
 | 
			
		||||
#include <Eigen/Cholesky>
 | 
			
		||||
#include <Eigen/LU>
 | 
			
		||||
#include <Eigen/QR>
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include "btl.hh"
 | 
			
		||||
 | 
			
		||||
using namespace Eigen;
 | 
			
		||||
 | 
			
		||||
template<class real, int SIZE=Dynamic>
 | 
			
		||||
class eigen2_interface
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  enum {IsFixedSize = (SIZE!=Dynamic)};
 | 
			
		||||
 | 
			
		||||
  typedef real real_type;
 | 
			
		||||
 | 
			
		||||
  typedef std::vector<real> stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector> stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef Eigen::Matrix<real,SIZE,SIZE> gene_matrix;
 | 
			
		||||
  typedef Eigen::Matrix<real,SIZE,1> gene_vector;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    #if defined(EIGEN_VECTORIZE_SSE)
 | 
			
		||||
    if (SIZE==Dynamic) return "eigen2"; else return "tiny_eigen2";
 | 
			
		||||
    #elif defined(EIGEN_VECTORIZE_ALTIVEC) || defined(EIGEN_VECTORIZE_VSX)
 | 
			
		||||
    if (SIZE==Dynamic) return "eigen2"; else return "tiny_eigen2";
 | 
			
		||||
    #else
 | 
			
		||||
    if (SIZE==Dynamic) return "eigen2_novec"; else return "tiny_eigen2_novec";
 | 
			
		||||
    #endif
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & A, int N) {}
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & B) {}
 | 
			
		||||
 | 
			
		||||
  static BTL_DONT_INLINE void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    A.resize(A_stl[0].size(), A_stl.size());
 | 
			
		||||
 | 
			
		||||
    for (int j=0; j<A_stl.size() ; j++){
 | 
			
		||||
      for (int i=0; i<A_stl[j].size() ; i++){
 | 
			
		||||
        A.coeffRef(i,j) = A_stl[j][i];
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static BTL_DONT_INLINE  void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B.resize(B_stl.size(),1);
 | 
			
		||||
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B.coeffRef(i) = B_stl[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static BTL_DONT_INLINE  void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B_stl[i] = B.coeff(i);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static BTL_DONT_INLINE  void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int N=A_stl.size();
 | 
			
		||||
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      A_stl[j].resize(N);
 | 
			
		||||
      for (int i=0;i<N;i++){
 | 
			
		||||
        A_stl[j][i] = A.coeff(i,j);
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    X = (A*B).lazy();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void transposed_matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    X = (A.transpose()*B.transpose()).lazy();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
    X = (A.transpose()*A).lazy();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
    X = (A*A.transpose()).lazy();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(const gene_matrix & A, const gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    X = (A*B)/*.lazy()*/;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    X = (A.transpose()*B)/*.lazy()*/;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(real coef, const gene_vector & X, gene_vector & Y, int N){
 | 
			
		||||
    Y += coef * X;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpby(real a, const gene_vector & X, real b, gene_vector & Y, int N){
 | 
			
		||||
    Y = a*X + b*Y;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector& X, int N){
 | 
			
		||||
    X = L.template marked<LowerTriangular>().solveTriangular(B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trisolve_lower_matrix(const gene_matrix & L, const gene_matrix& B, gene_matrix& X, int N){
 | 
			
		||||
    X = L.template marked<LowerTriangular>().solveTriangular(B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void cholesky(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    C = X.llt().matrixL();
 | 
			
		||||
//     C = X;
 | 
			
		||||
//     Cholesky<gene_matrix>::computeInPlace(C);
 | 
			
		||||
//     Cholesky<gene_matrix>::computeInPlaceBlock(C);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void lu_decomp(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    C = X.lu().matrixLU();
 | 
			
		||||
//     C = X.inverse();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void tridiagonalization(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    C = Tridiagonalization<gene_matrix>(X).packedMatrix();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void hessenberg(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
    C = HessenbergDecomposition<gene_matrix>(X).packedMatrix();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										44
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/main_adv.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										44
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/main_adv.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,44 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen2_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "action_trisolve.hh"
 | 
			
		||||
#include "action_trisolve_matrix.hh"
 | 
			
		||||
#include "action_cholesky.hh"
 | 
			
		||||
#include "action_hessenberg.hh"
 | 
			
		||||
#include "action_lu_decomp.hh"
 | 
			
		||||
// #include "action_partial_lu.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench<Action_trisolve<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_trisolve_matrix<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_cholesky<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_lu_decomp<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_partial_lu<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_hessenberg<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_tridiagonalization<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										34
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/main_linear.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										34
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/main_linear.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,34 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen2_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench<Action_axpy<eigen2_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_axpby<eigen2_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										35
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/main_matmat.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										35
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/main_matmat.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,35 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen2_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench<Action_matrix_matrix_product<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_ata_product<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_aat_product<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_trmm<eigen2_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										36
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/main_vecmat.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										36
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen2/main_vecmat.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,36 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen2_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench<Action_matrix_vector_product<eigen2_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_atv_product<eigen2_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
//   bench<Action_symv<eigen2_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
//   bench<Action_syr2<eigen2_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
//   bench<Action_ger<eigen2_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										65
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										65
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,65 @@
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
if((NOT EIGEN3_INCLUDE_DIR) AND Eigen_SOURCE_DIR)
 | 
			
		||||
  # unless EIGEN3_INCLUDE_DIR is defined, let's use current Eigen version
 | 
			
		||||
  set(EIGEN3_INCLUDE_DIR ${Eigen_SOURCE_DIR})
 | 
			
		||||
  set(EIGEN3_FOUND TRUE)
 | 
			
		||||
else()
 | 
			
		||||
  find_package(Eigen3)
 | 
			
		||||
endif()
 | 
			
		||||
 | 
			
		||||
if (EIGEN3_FOUND)
 | 
			
		||||
 | 
			
		||||
  include_directories(${EIGEN3_INCLUDE_DIR})
 | 
			
		||||
  btl_add_bench(btl_eigen3_linear main_linear.cpp)
 | 
			
		||||
  btl_add_bench(btl_eigen3_vecmat main_vecmat.cpp)
 | 
			
		||||
  btl_add_bench(btl_eigen3_matmat main_matmat.cpp)
 | 
			
		||||
  btl_add_bench(btl_eigen3_adv main_adv.cpp      )
 | 
			
		||||
 | 
			
		||||
  btl_add_target_property(btl_eigen3_linear COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=eigen3")
 | 
			
		||||
  btl_add_target_property(btl_eigen3_vecmat COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=eigen3")
 | 
			
		||||
  btl_add_target_property(btl_eigen3_matmat COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=eigen3")
 | 
			
		||||
  btl_add_target_property(btl_eigen3_adv    COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=eigen3")
 | 
			
		||||
 | 
			
		||||
  option(BTL_BENCH_NOGCCVEC "also bench Eigen explicit vec without GCC's auto vec" OFF)
 | 
			
		||||
  if(CMAKE_COMPILER_IS_GNUCXX AND BTL_BENCH_NOGCCVEC)
 | 
			
		||||
    btl_add_bench(btl_eigen3_nogccvec_linear main_linear.cpp)
 | 
			
		||||
    btl_add_bench(btl_eigen3_nogccvec_vecmat main_vecmat.cpp)
 | 
			
		||||
    btl_add_bench(btl_eigen3_nogccvec_matmat main_matmat.cpp)
 | 
			
		||||
    btl_add_bench(btl_eigen3_nogccvec_adv    main_adv.cpp   )
 | 
			
		||||
 | 
			
		||||
    btl_add_target_property(btl_eigen3_nogccvec_linear COMPILE_FLAGS "-fno-exceptions -fno-tree-vectorize -DBTL_PREFIX=eigen3_nogccvec")
 | 
			
		||||
    btl_add_target_property(btl_eigen3_nogccvec_vecmat COMPILE_FLAGS "-fno-exceptions -fno-tree-vectorize -DBTL_PREFIX=eigen3_nogccvec")
 | 
			
		||||
    btl_add_target_property(btl_eigen3_nogccvec_matmat COMPILE_FLAGS "-fno-exceptions -fno-tree-vectorize -DBTL_PREFIX=eigen3_nogccvec")
 | 
			
		||||
    btl_add_target_property(btl_eigen3_nogccvec_adv    COMPILE_FLAGS "-fno-exceptions -fno-tree-vectorize -DBTL_PREFIX=eigen3_nogccvec")
 | 
			
		||||
  endif()
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  if(NOT BTL_NOVEC)
 | 
			
		||||
    btl_add_bench(btl_eigen3_novec_linear main_linear.cpp OFF)
 | 
			
		||||
    btl_add_bench(btl_eigen3_novec_vecmat main_vecmat.cpp OFF)
 | 
			
		||||
    btl_add_bench(btl_eigen3_novec_matmat main_matmat.cpp OFF)
 | 
			
		||||
    btl_add_bench(btl_eigen3_novec_adv main_adv.cpp       OFF)
 | 
			
		||||
    btl_add_target_property(btl_eigen3_novec_linear COMPILE_FLAGS "-fno-exceptions -DEIGEN_DONT_VECTORIZE -DBTL_PREFIX=eigen3_novec")
 | 
			
		||||
    btl_add_target_property(btl_eigen3_novec_vecmat COMPILE_FLAGS "-fno-exceptions -DEIGEN_DONT_VECTORIZE -DBTL_PREFIX=eigen3_novec")
 | 
			
		||||
    btl_add_target_property(btl_eigen3_novec_matmat COMPILE_FLAGS "-fno-exceptions -DEIGEN_DONT_VECTORIZE -DBTL_PREFIX=eigen3_novec")
 | 
			
		||||
    btl_add_target_property(btl_eigen3_novec_adv    COMPILE_FLAGS "-fno-exceptions -DEIGEN_DONT_VECTORIZE -DBTL_PREFIX=eigen3_novec")
 | 
			
		||||
 | 
			
		||||
#     if(BUILD_btl_eigen3_adv)
 | 
			
		||||
#       target_link_libraries(btl_eigen3_adv ${MKL_LIBRARIES})
 | 
			
		||||
#     endif(BUILD_btl_eigen3_adv)
 | 
			
		||||
 | 
			
		||||
  endif(NOT BTL_NOVEC)
 | 
			
		||||
 | 
			
		||||
  btl_add_bench(btl_tiny_eigen3 btl_tiny_eigen3.cpp OFF)
 | 
			
		||||
 | 
			
		||||
  if(NOT BTL_NOVEC)
 | 
			
		||||
    btl_add_bench(btl_tiny_eigen3_novec btl_tiny_eigen3.cpp OFF)
 | 
			
		||||
    btl_add_target_property(btl_tiny_eigen3_novec    COMPILE_FLAGS "-DBTL_PREFIX=eigen3_tiny")
 | 
			
		||||
 | 
			
		||||
    if(BUILD_btl_tiny_eigen3_novec)
 | 
			
		||||
      btl_add_target_property(btl_tiny_eigen3_novec    COMPILE_FLAGS "-DEIGEN_DONT_VECTORIZE -DBTL_PREFIX=eigen3_tiny_novec")
 | 
			
		||||
    endif(BUILD_btl_tiny_eigen3_novec)
 | 
			
		||||
  endif(NOT BTL_NOVEC)
 | 
			
		||||
 | 
			
		||||
endif (EIGEN3_FOUND)
 | 
			
		||||
@@ -0,0 +1,46 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen3_interface.hh"
 | 
			
		||||
#include "static/bench_static.hh"
 | 
			
		||||
#include "action_matrix_vector_product.hh"
 | 
			
		||||
#include "action_matrix_matrix_product.hh"
 | 
			
		||||
#include "action_axpy.hh"
 | 
			
		||||
#include "action_lu_solve.hh"
 | 
			
		||||
#include "action_ata_product.hh"
 | 
			
		||||
#include "action_aat_product.hh"
 | 
			
		||||
#include "action_atv_product.hh"
 | 
			
		||||
#include "action_cholesky.hh"
 | 
			
		||||
#include "action_trisolve.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench_static<Action_axpy,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_matrix_matrix_product,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_matrix_vector_product,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_atv_product,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_cholesky,eigen2_interface>();
 | 
			
		||||
  bench_static<Action_trisolve,eigen2_interface>();
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										240
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/eigen3_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										240
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/eigen3_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,240 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef EIGEN3_INTERFACE_HH
 | 
			
		||||
#define EIGEN3_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include <Eigen/Eigen>
 | 
			
		||||
#include <vector>
 | 
			
		||||
#include "btl.hh"
 | 
			
		||||
 | 
			
		||||
using namespace Eigen;
 | 
			
		||||
 | 
			
		||||
template<class real, int SIZE=Dynamic>
 | 
			
		||||
class eigen3_interface
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  enum {IsFixedSize = (SIZE!=Dynamic)};
 | 
			
		||||
 | 
			
		||||
  typedef real real_type;
 | 
			
		||||
 | 
			
		||||
  typedef std::vector<real> stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector> stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef Eigen::Matrix<real,SIZE,SIZE> gene_matrix;
 | 
			
		||||
  typedef Eigen::Matrix<real,SIZE,1> gene_vector;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return EIGEN_MAKESTRING(BTL_PREFIX);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & /*A*/, int /*N*/) {}
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & /*B*/) {}
 | 
			
		||||
 | 
			
		||||
  static BTL_DONT_INLINE void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    A.resize(A_stl[0].size(), A_stl.size());
 | 
			
		||||
 | 
			
		||||
    for (unsigned int j=0; j<A_stl.size() ; j++){
 | 
			
		||||
      for (unsigned int i=0; i<A_stl[j].size() ; i++){
 | 
			
		||||
        A.coeffRef(i,j) = A_stl[j][i];
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static BTL_DONT_INLINE  void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B.resize(B_stl.size(),1);
 | 
			
		||||
 | 
			
		||||
    for (unsigned int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B.coeffRef(i) = B_stl[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static BTL_DONT_INLINE  void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    for (unsigned int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B_stl[i] = B.coeff(i);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static BTL_DONT_INLINE  void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int  N=A_stl.size();
 | 
			
		||||
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      A_stl[j].resize(N);
 | 
			
		||||
      for (int i=0;i<N;i++){
 | 
			
		||||
        A_stl[j][i] = A.coeff(i,j);
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int  /*N*/){
 | 
			
		||||
    X.noalias() = A*B;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void transposed_matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int  /*N*/){
 | 
			
		||||
    X.noalias() = A.transpose()*B.transpose();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
//   static inline void ata_product(const gene_matrix & A, gene_matrix & X, int  /*N*/){
 | 
			
		||||
//     X.noalias() = A.transpose()*A;
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
  static inline void aat_product(const gene_matrix & A, gene_matrix & X, int  /*N*/){
 | 
			
		||||
    X.template triangularView<Lower>().setZero();
 | 
			
		||||
    X.template selfadjointView<Lower>().rankUpdate(A);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(const gene_matrix & A, const gene_vector & B, gene_vector & X, int  /*N*/){
 | 
			
		||||
    X.noalias() = A*B;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void symv(const gene_matrix & A, const gene_vector & B, gene_vector & X, int  /*N*/){
 | 
			
		||||
    X.noalias() = (A.template selfadjointView<Lower>() * B);
 | 
			
		||||
//     internal::product_selfadjoint_vector<real,0,LowerTriangularBit,false,false>(N,A.data(),N, B.data(), 1, X.data(), 1);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  template<typename Dest, typename Src> static void triassign(Dest& dst, const Src& src)
 | 
			
		||||
  {
 | 
			
		||||
    typedef typename Dest::Scalar Scalar;
 | 
			
		||||
    typedef typename internal::packet_traits<Scalar>::type Packet;
 | 
			
		||||
    const int PacketSize = sizeof(Packet)/sizeof(Scalar);
 | 
			
		||||
    int size = dst.cols();
 | 
			
		||||
    for(int j=0; j<size; j+=1)
 | 
			
		||||
    {
 | 
			
		||||
//       const int alignedEnd = alignedStart + ((innerSize-alignedStart) & ~packetAlignedMask);
 | 
			
		||||
      Scalar* A0 = dst.data() + j*dst.stride();
 | 
			
		||||
      int starti = j;
 | 
			
		||||
      int alignedEnd = starti;
 | 
			
		||||
      int alignedStart = (starti) + internal::first_aligned(&A0[starti], size-starti);
 | 
			
		||||
      alignedEnd = alignedStart + ((size-alignedStart)/(2*PacketSize))*(PacketSize*2);
 | 
			
		||||
 | 
			
		||||
      // do the non-vectorizable part of the assignment
 | 
			
		||||
      for (int index = starti; index<alignedStart ; ++index)
 | 
			
		||||
      {
 | 
			
		||||
        if(Dest::Flags&RowMajorBit)
 | 
			
		||||
          dst.copyCoeff(j, index, src);
 | 
			
		||||
        else
 | 
			
		||||
          dst.copyCoeff(index, j, src);
 | 
			
		||||
      }
 | 
			
		||||
 | 
			
		||||
      // do the vectorizable part of the assignment
 | 
			
		||||
      for (int index = alignedStart; index<alignedEnd; index+=PacketSize)
 | 
			
		||||
      {
 | 
			
		||||
        if(Dest::Flags&RowMajorBit)
 | 
			
		||||
          dst.template copyPacket<Src, Aligned, Unaligned>(j, index, src);
 | 
			
		||||
        else
 | 
			
		||||
          dst.template copyPacket<Src, Aligned, Unaligned>(index, j, src);
 | 
			
		||||
      }
 | 
			
		||||
 | 
			
		||||
      // do the non-vectorizable part of the assignment
 | 
			
		||||
      for (int index = alignedEnd; index<size; ++index)
 | 
			
		||||
      {
 | 
			
		||||
        if(Dest::Flags&RowMajorBit)
 | 
			
		||||
          dst.copyCoeff(j, index, src);
 | 
			
		||||
        else
 | 
			
		||||
          dst.copyCoeff(index, j, src);
 | 
			
		||||
      }
 | 
			
		||||
      //dst.col(j).tail(N-j) = src.col(j).tail(N-j);
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static EIGEN_DONT_INLINE void syr2(gene_matrix & A,  gene_vector & X, gene_vector & Y, int  N){
 | 
			
		||||
    // internal::product_selfadjoint_rank2_update<real,0,LowerTriangularBit>(N,A.data(),N, X.data(), 1, Y.data(), 1, -1);
 | 
			
		||||
    for(int j=0; j<N; ++j)
 | 
			
		||||
      A.col(j).tail(N-j) += X[j] * Y.tail(N-j) + Y[j] * X.tail(N-j);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static EIGEN_DONT_INLINE void ger(gene_matrix & A,  gene_vector & X, gene_vector & Y, int  N){
 | 
			
		||||
    for(int j=0; j<N; ++j)
 | 
			
		||||
      A.col(j) += X * Y[j];
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static EIGEN_DONT_INLINE void rot(gene_vector & A,  gene_vector & B, real c, real s, int  /*N*/){
 | 
			
		||||
    internal::apply_rotation_in_the_plane(A, B, JacobiRotation<real>(c,s));
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int  /*N*/){
 | 
			
		||||
    X.noalias() = (A.transpose()*B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(real coef, const gene_vector & X, gene_vector & Y, int  /*N*/){
 | 
			
		||||
    Y += coef * X;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpby(real a, const gene_vector & X, real b, gene_vector & Y, int  /*N*/){
 | 
			
		||||
    Y = a*X + b*Y;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static EIGEN_DONT_INLINE void copy_matrix(const gene_matrix & source, gene_matrix & cible, int  /*N*/){
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static EIGEN_DONT_INLINE void copy_vector(const gene_vector & source, gene_vector & cible, int  /*N*/){
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector& X, int  /*N*/){
 | 
			
		||||
    X = L.template triangularView<Lower>().solve(B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trisolve_lower_matrix(const gene_matrix & L, const gene_matrix& B, gene_matrix& X, int  /*N*/){
 | 
			
		||||
    X = L.template triangularView<Upper>().solve(B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trmm(const gene_matrix & L, const gene_matrix& B, gene_matrix& X, int  /*N*/){
 | 
			
		||||
    X.noalias() = L.template triangularView<Lower>() * B;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void cholesky(const gene_matrix & X, gene_matrix & C, int  /*N*/){
 | 
			
		||||
    C = X;
 | 
			
		||||
    internal::llt_inplace<real,Lower>::blocked(C);
 | 
			
		||||
    //C = X.llt().matrixL();
 | 
			
		||||
//     C = X;
 | 
			
		||||
//     Cholesky<gene_matrix>::computeInPlace(C);
 | 
			
		||||
//     Cholesky<gene_matrix>::computeInPlaceBlock(C);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void lu_decomp(const gene_matrix & X, gene_matrix & C, int  /*N*/){
 | 
			
		||||
    C = X.fullPivLu().matrixLU();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void partial_lu_decomp(const gene_matrix & X, gene_matrix & C, int  N){
 | 
			
		||||
    Matrix<DenseIndex,1,Dynamic> piv(N);
 | 
			
		||||
    DenseIndex nb;
 | 
			
		||||
    C = X;
 | 
			
		||||
    internal::partial_lu_inplace(C,piv,nb);
 | 
			
		||||
//     C = X.partialPivLu().matrixLU();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void tridiagonalization(const gene_matrix & X, gene_matrix & C, int  N){
 | 
			
		||||
    typename Tridiagonalization<gene_matrix>::CoeffVectorType aux(N-1);
 | 
			
		||||
    C = X;
 | 
			
		||||
    internal::tridiagonalization_inplace(C, aux);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void hessenberg(const gene_matrix & X, gene_matrix & C, int  /*N*/){
 | 
			
		||||
    C = HessenbergDecomposition<gene_matrix>(X).packedMatrix();
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										44
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/main_adv.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										44
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/main_adv.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,44 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen3_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "action_trisolve.hh"
 | 
			
		||||
#include "action_trisolve_matrix.hh"
 | 
			
		||||
#include "action_cholesky.hh"
 | 
			
		||||
#include "action_hessenberg.hh"
 | 
			
		||||
#include "action_lu_decomp.hh"
 | 
			
		||||
#include "action_partial_lu.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench<Action_trisolve<eigen3_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
  bench<Action_trisolve_matrix<eigen3_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
  bench<Action_cholesky<eigen3_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
//   bench<Action_lu_decomp<eigen3_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
  bench<Action_partial_lu<eigen3_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
 | 
			
		||||
//   bench<Action_hessenberg<eigen3_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
  bench<Action_tridiagonalization<eigen3_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										35
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/main_linear.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										35
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/main_linear.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,35 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen3_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench<Action_axpy<eigen3_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_axpby<eigen3_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_rot<eigen3_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										35
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/main_matmat.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										35
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/main_matmat.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,35 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen3_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench<Action_matrix_matrix_product<eigen3_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_ata_product<eigen3_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_aat_product<eigen3_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_trmm<eigen3_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										36
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/main_vecmat.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										36
									
								
								cs440-acg/ext/eigen/bench/btl/libs/eigen3/main_vecmat.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,36 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "eigen3_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench<Action_matrix_vector_product<eigen3_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_atv_product<eigen3_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_symv<eigen3_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_syr2<eigen3_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_ger<eigen3_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										6
									
								
								cs440-acg/ext/eigen/bench/btl/libs/gmm/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										6
									
								
								cs440-acg/ext/eigen/bench/btl/libs/gmm/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,6 @@
 | 
			
		||||
 | 
			
		||||
find_package(GMM)
 | 
			
		||||
if (GMM_FOUND)
 | 
			
		||||
  include_directories(${GMM_INCLUDES})
 | 
			
		||||
  btl_add_bench(btl_gmm main.cpp)
 | 
			
		||||
endif (GMM_FOUND)
 | 
			
		||||
							
								
								
									
										192
									
								
								cs440-acg/ext/eigen/bench/btl/libs/gmm/gmm_LU_solve_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										192
									
								
								cs440-acg/ext/eigen/bench/btl/libs/gmm/gmm_LU_solve_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,192 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  blitz_LU_solve_interface.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:31 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef BLITZ_LU_SOLVE_INTERFACE_HH
 | 
			
		||||
#define BLITZ_LU_SOLVE_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include "blitz/array.h"
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
BZ_USING_NAMESPACE(blitz)
 | 
			
		||||
 | 
			
		||||
template<class real>
 | 
			
		||||
class blitz_LU_solve_interface : public blitz_interface<real>
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef typename blitz_interface<real>::gene_matrix gene_matrix;
 | 
			
		||||
  typedef typename blitz_interface<real>::gene_vector gene_vector;
 | 
			
		||||
 | 
			
		||||
  typedef blitz::Array<int,1> Pivot_Vector;
 | 
			
		||||
 | 
			
		||||
  inline static void new_Pivot_Vector(Pivot_Vector & pivot,int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    pivot.resize(N);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void free_Pivot_Vector(Pivot_Vector & pivot)
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    return;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline real matrix_vector_product_sliced(const gene_matrix & A, gene_vector B, int row, int col_start, int col_end)
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    real somme=0.;
 | 
			
		||||
    
 | 
			
		||||
    for (int j=col_start ; j<col_end+1 ; j++){
 | 
			
		||||
	
 | 
			
		||||
	somme+=A(row,j)*B(j);
 | 
			
		||||
	
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    return somme;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline real matrix_matrix_product_sliced(gene_matrix & A, int row, int col_start, int col_end, gene_matrix & B, int row_shift, int col )
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    real somme=0.;
 | 
			
		||||
    
 | 
			
		||||
    for (int j=col_start ; j<col_end+1 ; j++){
 | 
			
		||||
	
 | 
			
		||||
	somme+=A(row,j)*B(j+row_shift,col);
 | 
			
		||||
	
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    return somme;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void LU_factor(gene_matrix & LU, Pivot_Vector & pivot, int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    ASSERT( LU.rows()==LU.cols() ) ;
 | 
			
		||||
    int index_max = 0 ;
 | 
			
		||||
    real big = 0. ;
 | 
			
		||||
    real theSum = 0. ;
 | 
			
		||||
    real dum = 0. ;
 | 
			
		||||
    // Get the implicit scaling information :
 | 
			
		||||
    gene_vector ImplicitScaling( N ) ;
 | 
			
		||||
    for( int i=0; i<N; i++ ) {
 | 
			
		||||
      big = 0. ;
 | 
			
		||||
      for( int j=0; j<N; j++ ) {
 | 
			
		||||
	if( abs( LU( i, j ) )>=big ) big = abs( LU( i, j ) ) ;
 | 
			
		||||
      }
 | 
			
		||||
      if( big==0. ) {
 | 
			
		||||
	INFOS( "blitz_LU_factor::Singular matrix" ) ;
 | 
			
		||||
	exit( 0 ) ;
 | 
			
		||||
      }
 | 
			
		||||
      ImplicitScaling( i ) = 1./big ;
 | 
			
		||||
    }
 | 
			
		||||
    // Loop over columns of Crout's method :
 | 
			
		||||
    for( int j=0; j<N; j++ ) {
 | 
			
		||||
      for( int i=0; i<j; i++ ) {
 | 
			
		||||
	theSum = LU( i, j ) ;
 | 
			
		||||
	theSum -= matrix_matrix_product_sliced(LU, i, 0, i-1, LU, 0, j) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( fromStart, i-1 ) )*LU( Range( fromStart, i-1 ), j ) ) ;
 | 
			
		||||
	LU( i, j ) = theSum ;
 | 
			
		||||
      }
 | 
			
		||||
      
 | 
			
		||||
      // Search for the largest pivot element :
 | 
			
		||||
      big = 0. ;
 | 
			
		||||
      for( int i=j; i<N; i++ ) {
 | 
			
		||||
	theSum = LU( i, j ) ;
 | 
			
		||||
	theSum -= matrix_matrix_product_sliced(LU, i, 0, j-1, LU, 0, j) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( fromStart, j-1 ) )*LU( Range( fromStart, j-1 ), j ) ) ;
 | 
			
		||||
	LU( i, j ) = theSum ;
 | 
			
		||||
	if( (ImplicitScaling( i )*abs( theSum ))>=big ) {
 | 
			
		||||
	  dum = ImplicitScaling( i )*abs( theSum ) ;
 | 
			
		||||
	  big = dum ;
 | 
			
		||||
	  index_max = i ;
 | 
			
		||||
	}
 | 
			
		||||
      }
 | 
			
		||||
      // Interchanging rows and the scale factor :
 | 
			
		||||
      if( j!=index_max ) {
 | 
			
		||||
	for( int k=0; k<N; k++ ) {
 | 
			
		||||
	  dum = LU( index_max, k ) ;
 | 
			
		||||
	  LU( index_max, k ) = LU( j, k ) ;
 | 
			
		||||
	  LU( j, k ) = dum ;
 | 
			
		||||
	}
 | 
			
		||||
	ImplicitScaling( index_max ) = ImplicitScaling( j ) ;
 | 
			
		||||
      }
 | 
			
		||||
      pivot( j ) = index_max ;
 | 
			
		||||
      if ( LU( j, j )==0. ) LU( j, j ) = 1.e-20 ;
 | 
			
		||||
      // Divide by the pivot element :
 | 
			
		||||
      if( j<N ) {
 | 
			
		||||
	dum = 1./LU( j, j ) ;
 | 
			
		||||
	for( int i=j+1; i<N; i++ ) LU( i, j ) *= dum ;
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void LU_solve(const gene_matrix & LU, const Pivot_Vector pivot, gene_vector &B, gene_vector X, int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    // Pour conserver le meme header, on travaille sur X, copie du second-membre B
 | 
			
		||||
    X = B.copy() ;
 | 
			
		||||
    ASSERT( LU.rows()==LU.cols() ) ;
 | 
			
		||||
    firstIndex indI ;
 | 
			
		||||
    // Forward substitution :
 | 
			
		||||
    int ii = 0 ;
 | 
			
		||||
    real theSum = 0. ;
 | 
			
		||||
    for( int i=0; i<N; i++ ) {
 | 
			
		||||
      int ip = pivot( i ) ;
 | 
			
		||||
      theSum = X( ip ) ;
 | 
			
		||||
      //      theSum = B( ip ) ;
 | 
			
		||||
      X( ip ) = X( i ) ;
 | 
			
		||||
      //      B( ip ) = B( i ) ;
 | 
			
		||||
      if( ii ) {
 | 
			
		||||
	theSum -= matrix_vector_product_sliced(LU, X, i, ii-1, i-1) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( ii-1, i-1 ) )*X( Range( ii-1, i-1 ) ) ) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( ii-1, i-1 ) )*B( Range( ii-1, i-1 ) ) ) ;
 | 
			
		||||
      } else if( theSum ) {
 | 
			
		||||
	ii = i+1 ;
 | 
			
		||||
      }
 | 
			
		||||
      X( i ) = theSum ;
 | 
			
		||||
      //      B( i ) = theSum ;
 | 
			
		||||
    }
 | 
			
		||||
    // Backsubstitution :
 | 
			
		||||
    for( int i=N-1; i>=0; i-- ) {
 | 
			
		||||
      theSum = X( i ) ;
 | 
			
		||||
      //      theSum = B( i ) ;
 | 
			
		||||
      theSum -= matrix_vector_product_sliced(LU, X, i, i+1, N) ;
 | 
			
		||||
      //      theSum -= sum( LU( i, Range( i+1, toEnd ) )*X( Range( i+1, toEnd ) ) ) ;
 | 
			
		||||
      //      theSum -= sum( LU( i, Range( i+1, toEnd ) )*B( Range( i+1, toEnd ) ) ) ;
 | 
			
		||||
      // Store a component of the solution vector :
 | 
			
		||||
      X( i ) = theSum/LU( i, i ) ;
 | 
			
		||||
      //      B( i ) = theSum/LU( i, i ) ;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										144
									
								
								cs440-acg/ext/eigen/bench/btl/libs/gmm/gmm_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										144
									
								
								cs440-acg/ext/eigen/bench/btl/libs/gmm/gmm_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,144 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef GMM_INTERFACE_HH
 | 
			
		||||
#define GMM_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include <gmm/gmm.h>
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
using namespace gmm;
 | 
			
		||||
 | 
			
		||||
template<class real>
 | 
			
		||||
class gmm_interface {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef real real_type ;
 | 
			
		||||
 | 
			
		||||
  typedef std::vector<real>  stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector > stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef gmm::dense_matrix<real> gene_matrix;
 | 
			
		||||
  typedef stl_vector gene_vector;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name( void )
 | 
			
		||||
  {
 | 
			
		||||
    return "gmm";
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & A, int N){
 | 
			
		||||
    return ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & B){
 | 
			
		||||
    return ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    A.resize(A_stl[0].size(),A_stl.size());
 | 
			
		||||
 | 
			
		||||
    for (int j=0; j<A_stl.size() ; j++){
 | 
			
		||||
      for (int i=0; i<A_stl[j].size() ; i++){
 | 
			
		||||
        A(i,j) = A_stl[j][i];
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B = B_stl;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B_stl = B;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int N=A_stl.size();
 | 
			
		||||
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      A_stl[j].resize(N);
 | 
			
		||||
      for (int i=0;i<N;i++){
 | 
			
		||||
        A_stl[j][i] = A(i,j);
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    gmm::mult(A,B, X);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void transposed_matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    gmm::mult(gmm::transposed(A),gmm::transposed(B), X);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
    gmm::mult(gmm::transposed(A),A, X);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
    gmm::mult(A,gmm::transposed(A), X);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    gmm::mult(A,B,X);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    gmm::mult(gmm::transposed(A),B,X);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(const real coef, const gene_vector & X, gene_vector & Y, int N){
 | 
			
		||||
    gmm::add(gmm::scaled(X,coef), Y);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpby(real a, const gene_vector & X, real b, gene_vector & Y, int N){
 | 
			
		||||
    gmm::add(gmm::scaled(X,a), gmm::scaled(Y,b), Y);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
 | 
			
		||||
    gmm::copy(source,cible);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
 | 
			
		||||
    gmm::copy(source,cible);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector & X, int N){
 | 
			
		||||
    gmm::copy(B,X);
 | 
			
		||||
    gmm::lower_tri_solve(L, X, false);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void partial_lu_decomp(const gene_matrix & X, gene_matrix & R, int N){
 | 
			
		||||
    gmm::copy(X,R);
 | 
			
		||||
    std::vector<int> ipvt(N);
 | 
			
		||||
    gmm::lu_factor(R, ipvt);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void hessenberg(const gene_matrix & X, gene_matrix & R, int N){
 | 
			
		||||
    gmm::copy(X,R);
 | 
			
		||||
    gmm::Hessenberg_reduction(R,X,false);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void tridiagonalization(const gene_matrix & X, gene_matrix & R, int N){
 | 
			
		||||
    gmm::copy(X,R);
 | 
			
		||||
    gmm::Householder_tridiagonalization(R,X,false);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										51
									
								
								cs440-acg/ext/eigen/bench/btl/libs/gmm/main.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										51
									
								
								cs440-acg/ext/eigen/bench/btl/libs/gmm/main.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,51 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "gmm_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
#include "action_hessenberg.hh"
 | 
			
		||||
#include "action_partial_lu.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench<Action_axpy<gmm_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_axpby<gmm_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_matrix_vector_product<gmm_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_atv_product<gmm_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_matrix_matrix_product<gmm_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_ata_product<gmm_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_aat_product<gmm_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_trisolve<gmm_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  //bench<Action_lu_solve<blitz_LU_solve_interface<REAL_TYPE> > >(MIN_LU,MAX_LU,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_partial_lu<gmm_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  
 | 
			
		||||
  bench<Action_hessenberg<gmm_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
  bench<Action_tridiagonalization<gmm_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
							
								
								
									
										12
									
								
								cs440-acg/ext/eigen/bench/btl/libs/mtl4/.kdbgrc.main
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										12
									
								
								cs440-acg/ext/eigen/bench/btl/libs/mtl4/.kdbgrc.main
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,12 @@
 | 
			
		||||
[General]
 | 
			
		||||
DebuggerCmdStr=
 | 
			
		||||
DriverName=GDB
 | 
			
		||||
FileVersion=1
 | 
			
		||||
OptionsSelected=
 | 
			
		||||
ProgramArgs=
 | 
			
		||||
TTYLevel=7
 | 
			
		||||
WorkingDirectory=
 | 
			
		||||
 | 
			
		||||
[Memory]
 | 
			
		||||
ColumnWidths=80,0
 | 
			
		||||
NumExprs=0
 | 
			
		||||
							
								
								
									
										6
									
								
								cs440-acg/ext/eigen/bench/btl/libs/mtl4/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										6
									
								
								cs440-acg/ext/eigen/bench/btl/libs/mtl4/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,6 @@
 | 
			
		||||
 | 
			
		||||
find_package(MTL4)
 | 
			
		||||
if (MTL4_FOUND)
 | 
			
		||||
  include_directories(${MTL4_INCLUDE_DIR})
 | 
			
		||||
  btl_add_bench(btl_mtl4 main.cpp)
 | 
			
		||||
endif (MTL4_FOUND)
 | 
			
		||||
							
								
								
									
										46
									
								
								cs440-acg/ext/eigen/bench/btl/libs/mtl4/main.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										46
									
								
								cs440-acg/ext/eigen/bench/btl/libs/mtl4/main.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,46 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "mtl4_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
#include "action_cholesky.hh"
 | 
			
		||||
// #include "action_lu_decomp.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
  bench<Action_axpy<mtl4_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_axpby<mtl4_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_matrix_vector_product<mtl4_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_atv_product<mtl4_interface<REAL_TYPE> > >(MIN_MV,MAX_MV,NB_POINT);
 | 
			
		||||
  bench<Action_matrix_matrix_product<mtl4_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_ata_product<mtl4_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_aat_product<mtl4_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  bench<Action_trisolve<mtl4_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_cholesky<mtl4_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
//   bench<Action_lu_decomp<mtl4_interface<REAL_TYPE> > >(MIN_MM,MAX_MM,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
@@ -0,0 +1,192 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// File   :  blitz_LU_solve_interface.hh
 | 
			
		||||
// Author :  L. Plagne <laurent.plagne@edf.fr)>        
 | 
			
		||||
// Copyright (C) EDF R&D,  lun sep 30 14:23:31 CEST 2002
 | 
			
		||||
//=====================================================
 | 
			
		||||
// 
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
// 
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
// 
 | 
			
		||||
#ifndef BLITZ_LU_SOLVE_INTERFACE_HH
 | 
			
		||||
#define BLITZ_LU_SOLVE_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include "blitz/array.h"
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
BZ_USING_NAMESPACE(blitz)
 | 
			
		||||
 | 
			
		||||
template<class real>
 | 
			
		||||
class blitz_LU_solve_interface : public blitz_interface<real>
 | 
			
		||||
{
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef typename blitz_interface<real>::gene_matrix gene_matrix;
 | 
			
		||||
  typedef typename blitz_interface<real>::gene_vector gene_vector;
 | 
			
		||||
 | 
			
		||||
  typedef blitz::Array<int,1> Pivot_Vector;
 | 
			
		||||
 | 
			
		||||
  inline static void new_Pivot_Vector(Pivot_Vector & pivot,int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    pivot.resize(N);
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void free_Pivot_Vector(Pivot_Vector & pivot)
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    return;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline real matrix_vector_product_sliced(const gene_matrix & A, gene_vector B, int row, int col_start, int col_end)
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    real somme=0.;
 | 
			
		||||
    
 | 
			
		||||
    for (int j=col_start ; j<col_end+1 ; j++){
 | 
			
		||||
	
 | 
			
		||||
	somme+=A(row,j)*B(j);
 | 
			
		||||
	
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    return somme;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  static inline real matrix_matrix_product_sliced(gene_matrix & A, int row, int col_start, int col_end, gene_matrix & B, int row_shift, int col )
 | 
			
		||||
  {
 | 
			
		||||
    
 | 
			
		||||
    real somme=0.;
 | 
			
		||||
    
 | 
			
		||||
    for (int j=col_start ; j<col_end+1 ; j++){
 | 
			
		||||
	
 | 
			
		||||
	somme+=A(row,j)*B(j+row_shift,col);
 | 
			
		||||
	
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
    return somme;
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void LU_factor(gene_matrix & LU, Pivot_Vector & pivot, int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    ASSERT( LU.rows()==LU.cols() ) ;
 | 
			
		||||
    int index_max = 0 ;
 | 
			
		||||
    real big = 0. ;
 | 
			
		||||
    real theSum = 0. ;
 | 
			
		||||
    real dum = 0. ;
 | 
			
		||||
    // Get the implicit scaling information :
 | 
			
		||||
    gene_vector ImplicitScaling( N ) ;
 | 
			
		||||
    for( int i=0; i<N; i++ ) {
 | 
			
		||||
      big = 0. ;
 | 
			
		||||
      for( int j=0; j<N; j++ ) {
 | 
			
		||||
	if( abs( LU( i, j ) )>=big ) big = abs( LU( i, j ) ) ;
 | 
			
		||||
      }
 | 
			
		||||
      if( big==0. ) {
 | 
			
		||||
	INFOS( "blitz_LU_factor::Singular matrix" ) ;
 | 
			
		||||
	exit( 0 ) ;
 | 
			
		||||
      }
 | 
			
		||||
      ImplicitScaling( i ) = 1./big ;
 | 
			
		||||
    }
 | 
			
		||||
    // Loop over columns of Crout's method :
 | 
			
		||||
    for( int j=0; j<N; j++ ) {
 | 
			
		||||
      for( int i=0; i<j; i++ ) {
 | 
			
		||||
	theSum = LU( i, j ) ;
 | 
			
		||||
	theSum -= matrix_matrix_product_sliced(LU, i, 0, i-1, LU, 0, j) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( fromStart, i-1 ) )*LU( Range( fromStart, i-1 ), j ) ) ;
 | 
			
		||||
	LU( i, j ) = theSum ;
 | 
			
		||||
      }
 | 
			
		||||
      
 | 
			
		||||
      // Search for the largest pivot element :
 | 
			
		||||
      big = 0. ;
 | 
			
		||||
      for( int i=j; i<N; i++ ) {
 | 
			
		||||
	theSum = LU( i, j ) ;
 | 
			
		||||
	theSum -= matrix_matrix_product_sliced(LU, i, 0, j-1, LU, 0, j) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( fromStart, j-1 ) )*LU( Range( fromStart, j-1 ), j ) ) ;
 | 
			
		||||
	LU( i, j ) = theSum ;
 | 
			
		||||
	if( (ImplicitScaling( i )*abs( theSum ))>=big ) {
 | 
			
		||||
	  dum = ImplicitScaling( i )*abs( theSum ) ;
 | 
			
		||||
	  big = dum ;
 | 
			
		||||
	  index_max = i ;
 | 
			
		||||
	}
 | 
			
		||||
      }
 | 
			
		||||
      // Interchanging rows and the scale factor :
 | 
			
		||||
      if( j!=index_max ) {
 | 
			
		||||
	for( int k=0; k<N; k++ ) {
 | 
			
		||||
	  dum = LU( index_max, k ) ;
 | 
			
		||||
	  LU( index_max, k ) = LU( j, k ) ;
 | 
			
		||||
	  LU( j, k ) = dum ;
 | 
			
		||||
	}
 | 
			
		||||
	ImplicitScaling( index_max ) = ImplicitScaling( j ) ;
 | 
			
		||||
      }
 | 
			
		||||
      pivot( j ) = index_max ;
 | 
			
		||||
      if ( LU( j, j )==0. ) LU( j, j ) = 1.e-20 ;
 | 
			
		||||
      // Divide by the pivot element :
 | 
			
		||||
      if( j<N ) {
 | 
			
		||||
	dum = 1./LU( j, j ) ;
 | 
			
		||||
	for( int i=j+1; i<N; i++ ) LU( i, j ) *= dum ;
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  inline static void LU_solve(const gene_matrix & LU, const Pivot_Vector pivot, gene_vector &B, gene_vector X, int N)
 | 
			
		||||
  {
 | 
			
		||||
 | 
			
		||||
    // Pour conserver le meme header, on travaille sur X, copie du second-membre B
 | 
			
		||||
    X = B.copy() ;
 | 
			
		||||
    ASSERT( LU.rows()==LU.cols() ) ;
 | 
			
		||||
    firstIndex indI ;
 | 
			
		||||
    // Forward substitution :
 | 
			
		||||
    int ii = 0 ;
 | 
			
		||||
    real theSum = 0. ;
 | 
			
		||||
    for( int i=0; i<N; i++ ) {
 | 
			
		||||
      int ip = pivot( i ) ;
 | 
			
		||||
      theSum = X( ip ) ;
 | 
			
		||||
      //      theSum = B( ip ) ;
 | 
			
		||||
      X( ip ) = X( i ) ;
 | 
			
		||||
      //      B( ip ) = B( i ) ;
 | 
			
		||||
      if( ii ) {
 | 
			
		||||
	theSum -= matrix_vector_product_sliced(LU, X, i, ii-1, i-1) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( ii-1, i-1 ) )*X( Range( ii-1, i-1 ) ) ) ;
 | 
			
		||||
	//	theSum -= sum( LU( i, Range( ii-1, i-1 ) )*B( Range( ii-1, i-1 ) ) ) ;
 | 
			
		||||
      } else if( theSum ) {
 | 
			
		||||
	ii = i+1 ;
 | 
			
		||||
      }
 | 
			
		||||
      X( i ) = theSum ;
 | 
			
		||||
      //      B( i ) = theSum ;
 | 
			
		||||
    }
 | 
			
		||||
    // Backsubstitution :
 | 
			
		||||
    for( int i=N-1; i>=0; i-- ) {
 | 
			
		||||
      theSum = X( i ) ;
 | 
			
		||||
      //      theSum = B( i ) ;
 | 
			
		||||
      theSum -= matrix_vector_product_sliced(LU, X, i, i+1, N) ;
 | 
			
		||||
      //      theSum -= sum( LU( i, Range( i+1, toEnd ) )*X( Range( i+1, toEnd ) ) ) ;
 | 
			
		||||
      //      theSum -= sum( LU( i, Range( i+1, toEnd ) )*B( Range( i+1, toEnd ) ) ) ;
 | 
			
		||||
      // Store a component of the solution vector :
 | 
			
		||||
      X( i ) = theSum/LU( i, i ) ;
 | 
			
		||||
      //      B( i ) = theSum/LU( i, i ) ;
 | 
			
		||||
    }
 | 
			
		||||
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										144
									
								
								cs440-acg/ext/eigen/bench/btl/libs/mtl4/mtl4_interface.hh
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										144
									
								
								cs440-acg/ext/eigen/bench/btl/libs/mtl4/mtl4_interface.hh
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,144 @@
 | 
			
		||||
//=====================================================
 | 
			
		||||
// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
 | 
			
		||||
//=====================================================
 | 
			
		||||
//
 | 
			
		||||
// This program is free software; you can redistribute it and/or
 | 
			
		||||
// modify it under the terms of the GNU General Public License
 | 
			
		||||
// as published by the Free Software Foundation; either version 2
 | 
			
		||||
// of the License, or (at your option) any later version.
 | 
			
		||||
//
 | 
			
		||||
// This program is distributed in the hope that it will be useful,
 | 
			
		||||
// but WITHOUT ANY WARRANTY; without even the implied warranty of
 | 
			
		||||
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 | 
			
		||||
// GNU General Public License for more details.
 | 
			
		||||
// You should have received a copy of the GNU General Public License
 | 
			
		||||
// along with this program; if not, write to the Free Software
 | 
			
		||||
// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
 | 
			
		||||
//
 | 
			
		||||
#ifndef MTL4_INTERFACE_HH
 | 
			
		||||
#define MTL4_INTERFACE_HH
 | 
			
		||||
 | 
			
		||||
#include <boost/numeric/mtl/mtl.hpp>
 | 
			
		||||
#include <boost/numeric/mtl/utility/range_generator.hpp>
 | 
			
		||||
// #include <boost/numeric/mtl/operation/cholesky.hpp>
 | 
			
		||||
#include <vector>
 | 
			
		||||
 | 
			
		||||
using namespace mtl;
 | 
			
		||||
 | 
			
		||||
template<class real>
 | 
			
		||||
class mtl4_interface {
 | 
			
		||||
 | 
			
		||||
public :
 | 
			
		||||
 | 
			
		||||
  typedef real real_type ;
 | 
			
		||||
 | 
			
		||||
  typedef std::vector<real>  stl_vector;
 | 
			
		||||
  typedef std::vector<stl_vector > stl_matrix;
 | 
			
		||||
 | 
			
		||||
  typedef mtl::dense2D<real, mtl::matrix::parameters<mtl::tag::col_major> > gene_matrix;
 | 
			
		||||
  typedef mtl::dense_vector<real>  gene_vector;
 | 
			
		||||
 | 
			
		||||
  static inline std::string name() { return "mtl4"; }
 | 
			
		||||
 | 
			
		||||
  static void free_matrix(gene_matrix & A, int N){
 | 
			
		||||
    return ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static void free_vector(gene_vector & B){
 | 
			
		||||
    return ;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    A.change_dim(A_stl[0].size(), A_stl.size());
 | 
			
		||||
 | 
			
		||||
    for (int j=0; j<A_stl.size() ; j++){
 | 
			
		||||
      for (int i=0; i<A_stl[j].size() ; i++){
 | 
			
		||||
        A(i,j) = A_stl[j][i];
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    B.change_dim(B_stl.size());
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B[i] = B_stl[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
 | 
			
		||||
    for (int i=0; i<B_stl.size() ; i++){
 | 
			
		||||
      B_stl[i] = B[i];
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
 | 
			
		||||
    int N=A_stl.size();
 | 
			
		||||
    for (int j=0;j<N;j++){
 | 
			
		||||
      A_stl[j].resize(N);
 | 
			
		||||
      for (int i=0;i<N;i++){
 | 
			
		||||
        A_stl[j][i] = A(i,j);
 | 
			
		||||
      }
 | 
			
		||||
    }
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    X = (A*B);
 | 
			
		||||
//     morton_dense<double, doppled_64_row_mask> C(N,N);
 | 
			
		||||
//     C = B;
 | 
			
		||||
//     X = (A*C);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void transposed_matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
 | 
			
		||||
    X = (trans(A)*trans(B));
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
//   static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
//     X = (trans(A)*A);
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
  static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N){
 | 
			
		||||
    X = (A*trans(A));
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    X = (A*B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
 | 
			
		||||
    X = (trans(A)*B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpy(const real coef, const gene_vector & X, gene_vector & Y, int N){
 | 
			
		||||
    Y += coef * X;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void axpby(real a, const gene_vector & X, real b, gene_vector & Y, int N){
 | 
			
		||||
    Y = a*X + b*Y;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
//   static inline void cholesky(const gene_matrix & X, gene_matrix & C, int N){
 | 
			
		||||
//     C = X;
 | 
			
		||||
//     recursive_cholesky(C);
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
//   static inline void lu_decomp(const gene_matrix & X, gene_matrix & R, int N){
 | 
			
		||||
//     R = X;
 | 
			
		||||
//     std::vector<int> ipvt(N);
 | 
			
		||||
//     lu_factor(R, ipvt);
 | 
			
		||||
//   }
 | 
			
		||||
 | 
			
		||||
  static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector & X, int N){
 | 
			
		||||
    X = lower_trisolve(L, B);
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
 | 
			
		||||
    cible = source;
 | 
			
		||||
  }
 | 
			
		||||
 | 
			
		||||
};
 | 
			
		||||
 | 
			
		||||
#endif
 | 
			
		||||
							
								
								
									
										44
									
								
								cs440-acg/ext/eigen/bench/btl/libs/tensors/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										44
									
								
								cs440-acg/ext/eigen/bench/btl/libs/tensors/CMakeLists.txt
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,44 @@
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
if((NOT TENSOR_INCLUDE_DIR) AND Eigen_SOURCE_DIR)
 | 
			
		||||
  # unless TENSOR_INCLUDE_DIR is defined, let's use current Eigen version
 | 
			
		||||
  set(TENSOR_INCLUDE_DIR ${Eigen_SOURCE_DIR})
 | 
			
		||||
  set(TENSOR_FOUND TRUE)
 | 
			
		||||
else()
 | 
			
		||||
  find_package(Tensor)
 | 
			
		||||
endif()
 | 
			
		||||
 | 
			
		||||
if (TENSOR_FOUND)
 | 
			
		||||
 | 
			
		||||
  include_directories(${TENSOR_INCLUDE_DIR})
 | 
			
		||||
  btl_add_bench(btl_tensor_linear main_linear.cpp)
 | 
			
		||||
  btl_add_bench(btl_tensor_vecmat main_vecmat.cpp)
 | 
			
		||||
  btl_add_bench(btl_tensor_matmat main_matmat.cpp)
 | 
			
		||||
 | 
			
		||||
  btl_add_target_property(btl_tensor_linear COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=tensor")
 | 
			
		||||
  btl_add_target_property(btl_tensor_vecmat COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=tensor")
 | 
			
		||||
  btl_add_target_property(btl_tensor_matmat COMPILE_FLAGS "-fno-exceptions -DBTL_PREFIX=tensor")
 | 
			
		||||
 | 
			
		||||
  option(BTL_BENCH_NOGCCVEC "also bench Eigen explicit vec without GCC's auto vec" OFF)
 | 
			
		||||
  if(CMAKE_COMPILER_IS_GNUCXX AND BTL_BENCH_NOGCCVEC)
 | 
			
		||||
    btl_add_bench(btl_tensor_nogccvec_linear main_linear.cpp)
 | 
			
		||||
    btl_add_bench(btl_tensor_nogccvec_vecmat main_vecmat.cpp)
 | 
			
		||||
    btl_add_bench(btl_tensor_nogccvec_matmat main_matmat.cpp)
 | 
			
		||||
 | 
			
		||||
    btl_add_target_property(btl_tensor_nogccvec_linear COMPILE_FLAGS "-fno-exceptions -fno-tree-vectorize -DBTL_PREFIX=tensor_nogccvec")
 | 
			
		||||
    btl_add_target_property(btl_tensor_nogccvec_vecmat COMPILE_FLAGS "-fno-exceptions -fno-tree-vectorize -DBTL_PREFIX=tensor_nogccvec")
 | 
			
		||||
    btl_add_target_property(btl_tensor_nogccvec_matmat COMPILE_FLAGS "-fno-exceptions -fno-tree-vectorize -DBTL_PREFIX=tensor_nogccvec")
 | 
			
		||||
  endif()
 | 
			
		||||
 | 
			
		||||
 | 
			
		||||
  if(NOT BTL_NOVEC)
 | 
			
		||||
    btl_add_bench(btl_tensor_novec_linear main_linear.cpp OFF)
 | 
			
		||||
    btl_add_bench(btl_tensor_novec_vecmat main_vecmat.cpp OFF)
 | 
			
		||||
    btl_add_bench(btl_tensor_novec_matmat main_matmat.cpp OFF)
 | 
			
		||||
    btl_add_target_property(btl_tensor_novec_linear COMPILE_FLAGS "-fno-exceptions -DEIGEN_DONT_VECTORIZE -DBTL_PREFIX=tensor_novec")
 | 
			
		||||
    btl_add_target_property(btl_tensor_novec_vecmat COMPILE_FLAGS "-fno-exceptions -DEIGEN_DONT_VECTORIZE -DBTL_PREFIX=tensor_novec")
 | 
			
		||||
    btl_add_target_property(btl_tensor_novec_matmat COMPILE_FLAGS "-fno-exceptions -DEIGEN_DONT_VECTORIZE -DBTL_PREFIX=tensor_novec")
 | 
			
		||||
 | 
			
		||||
  endif(NOT BTL_NOVEC)
 | 
			
		||||
 | 
			
		||||
endif (TENSOR_FOUND)
 | 
			
		||||
							
								
								
									
										23
									
								
								cs440-acg/ext/eigen/bench/btl/libs/tensors/main_linear.cpp
									
									
									
									
									
										Normal file
									
								
							
							
						
						
									
										23
									
								
								cs440-acg/ext/eigen/bench/btl/libs/tensors/main_linear.cpp
									
									
									
									
									
										Normal file
									
								
							@@ -0,0 +1,23 @@
 | 
			
		||||
// This file is part of Eigen, a lightweight C++ template library
 | 
			
		||||
// for linear algebra.
 | 
			
		||||
//
 | 
			
		||||
// Copyright (C) 2014 Benoit Steiner <benoit.steiner.goog@gmail.com>
 | 
			
		||||
//
 | 
			
		||||
// This Source Code Form is subject to the terms of the Mozilla
 | 
			
		||||
// Public License v. 2.0. If a copy of the MPL was not distributed
 | 
			
		||||
// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
 | 
			
		||||
 | 
			
		||||
#include "utilities.h"
 | 
			
		||||
#include "tensor_interface.hh"
 | 
			
		||||
#include "bench.hh"
 | 
			
		||||
#include "basic_actions.hh"
 | 
			
		||||
 | 
			
		||||
BTL_MAIN;
 | 
			
		||||
 | 
			
		||||
int main()
 | 
			
		||||
{
 | 
			
		||||
  bench<Action_axpy<tensor_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
  bench<Action_axpby<tensor_interface<REAL_TYPE> > >(MIN_AXPY,MAX_AXPY,NB_POINT);
 | 
			
		||||
 | 
			
		||||
  return 0;
 | 
			
		||||
}
 | 
			
		||||
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